View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_5 (Length: 551)
Name: NF8936_low_5
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 2 - 537
Target Start/End: Original strand, 1216263 - 1216798
Alignment:
| Q |
2 |
atagacattaccattgctgaatagtatagtaacatcaaataaggcttatctagcccagtttaattaccaggaattccaactgctgaggtccaatgttatt |
101 |
Q |
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| T |
1216263 |
atagacattaccattgctgaatagtatagtaacatcaaataaggcttatctagcccagtttaattac-aggaattccaactgctgaggtccaatgttatt |
1216361 |
T |
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| Q |
102 |
gcaacattctagcattattttcttacatgtgcacatcagttcatgaaaactgcaaaactactaacnnnnnnnntagtttaattggaatacnnnnnnngaa |
201 |
Q |
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| T |
1216362 |
gcaacattctagcattattttcttacatgtgcacatcagttcatgaaaactgcaaaactactaacaaaaaaaatagtttaattggaatacaaaataagaa |
1216461 |
T |
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| Q |
202 |
aagttgaggtattccttttgagttgcaagtgcctatgtcttggagaaacaactatgacagatcaatttttaacacaaataaaagcaagaagaaatgtgac |
301 |
Q |
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| T |
1216462 |
aagttgaggtattccttttgagttgcaagtgcctatgtcttggagaaacaactatgacagatcaatttttaacacaaataaaagcaagaagaaatgtgac |
1216561 |
T |
|
| Q |
302 |
taatcagatttgttttgaagagaaactattttaagtaatgctttctataactgattactctgttaggattcagctttgtataaaaaacaaaataaacact |
401 |
Q |
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| T |
1216562 |
taatcagattggttttgaagagaaactattttaagtaatgctttctataactgattactctgttaggattcagctttgtataaaaaacaaaataaacact |
1216661 |
T |
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| Q |
402 |
gctaagtagacacacacatccaataccccactttgcactaaaaataataataatctcagacca-tgagagnnnnnnnnnnnntccaaccatacactaaat |
500 |
Q |
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| T |
1216662 |
gctaagtagacacacacatccaataccccactttgcactaaaaataataataatctcagaccagtgagagacacacacacactccaaccatacactaaat |
1216761 |
T |
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| Q |
501 |
tccatttattgtaatttatttctatggttggaaatga |
537 |
Q |
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| T |
1216762 |
tccatttattgtaatttatttctatggttggaaatga |
1216798 |
T |
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