View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_6 (Length: 536)
Name: NF8936_low_6
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Original strand, 52396091 - 52396599
Alignment:
| Q |
15 |
cagagaattacgattattaataggattgtgagaannnnnnngacttacataggtgttgagctggcgaatgaagctagaaaaattattatgcttaaagtac |
114 |
Q |
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| T |
52396091 |
cagagaattacgattattaataggattgtgagaatttttttgacttacataggtgttgagctggcgaatgaagctagaaaaattattatgcttaaagtac |
52396190 |
T |
|
| Q |
115 |
ttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgagaagcactccatgaaacaatcgggtcagtttccggatcatcca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
52396191 |
ttaggaagaagaattttggagaattcatgagaatcccaaacaacaaaactatcacgagaagcactccatgaaacaatcgggtcagtttccagatcctcca |
52396290 |
T |
|
| Q |
215 |
ccatttcaaaagttttcttgagaaacggtggtggaccaacctcatgtagcccttccattggttttggaaacctgagtgaagatgaagcgt---tagcacc |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52396291 |
ccatttcaaaagtcttcttgagaaacggtggtggaccaacctcatgtagcccttccattggttttggaaacctgagtgaagatgaagcgtgagcagcacc |
52396390 |
T |
|
| Q |
312 |
gtcgtcttcttcaagaacttcttctttgatatgaattgcgtgagaagctgtagcac---cttcttcttcttcggtaagtactgattcttttctttcggtt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
52396391 |
gtcgtcttcttcaagaacttcttctttgatatgaattgcgtgagaagctgtagcaccttcttcttcttcttcggttagtactgattcttttctttcggtt |
52396490 |
T |
|
| Q |
409 |
gaaacgtcgtcgtaggtgtaagagctggaatttgcactgtcattgaataactctggttttattgatgggattagacgagaattgtagccaccgatttcac |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52396491 |
gaaacgtcgtcgtaggtgtaagagctggaatttgcactgtcattgaataactctggttttattgatgggattagacgagaattgtagccaccgatttcac |
52396590 |
T |
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| Q |
509 |
cgtcgtaac |
517 |
Q |
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| T |
52396591 |
cgtcgtaac |
52396599 |
T |
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