View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_high_12 (Length: 356)
Name: NF8937_high_12
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35497397 - 35497625
Alignment:
| Q |
1 |
aaaactttggattgcatcgat-gtaacgccttatattggtgtttatagttttgtgagcatgcaatatattataaaagtgtgtacatgtgccatccatgca |
99 |
Q |
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| T |
35497397 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagttta-tgagcatgcaatatattataaaagtgtgtacatgtgccatccatgca |
35497495 |
T |
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| Q |
100 |
catgacaaatctatgtttttaatattatttatatgttt----attttaaagtattgtatgaatatgaaatatactagtgtgtactaatgccatgcaatta |
195 |
Q |
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| T |
35497496 |
catgacaaatctatgtttttaatattatttatatgtttattaattttaaagtattgtatgaatatgaaatatactagtgtctactaatgccatgcaatta |
35497595 |
T |
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| Q |
196 |
ctattggcaattatatgatgaagattttac |
225 |
Q |
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| T |
35497596 |
ctattggcaattatatgatgaagattttac |
35497625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35491179 - 35491391
Alignment:
| Q |
1 |
aaaactttggattgcatcgat-gtaacgccttatattggtgtttatagttttgtgagcatgcaatatattataaaagtgtgtacatgtgccatccatgca |
99 |
Q |
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| T |
35491179 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatag-tttatgagcatgcagtatattacgttagtgtgtacatgtcccatacaag-- |
35491275 |
T |
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| Q |
100 |
catgacaaatctatgtttttaatattatttatatgtttattttaaagtattgtatgaatatgaaatatactagtgtgtactaatgccatgcaat-tacta |
198 |
Q |
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| T |
35491276 |
--ggacaattttatgtttttattagtatttatatgttcattttaaagtattg------tatgaaatatattagtgtgtactgatgcaatgcaatatatta |
35491367 |
T |
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| Q |
199 |
ttggcaattatatgatgaagattt |
222 |
Q |
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| T |
35491368 |
ttggcaattatatgatgaagattt |
35491391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 35497951 - 35498024
Alignment:
| Q |
267 |
aaaacattttttgaattaaaatttgagagtcccattggaattgtcatgtcatcaaaaggatgtgacgagctatc |
340 |
Q |
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| T |
35497951 |
aaaacattttttgaattaaaatttgagagtcccattggaaatgtcatgtcatcaaaaggatgtgagcagctatc |
35498024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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