View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_high_16 (Length: 300)
Name: NF8937_high_16
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 37224264 - 37224544
Alignment:
| Q |
1 |
agacaaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggaggtt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224264 |
agacgaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggaggtt |
37224363 |
T |
|
| Q |
101 |
caagaggccatgatcggaatgtgggggcattcccattgcaagctcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224364 |
caagaggccatgatcggaatgtgggggcattcccattgcaagatcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaatct |
37224463 |
T |
|
| Q |
201 |
agattcattgttttgtctatatagttgacttccaaacccaaactttctgatattcctttgagaagttctctacctaatttc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224464 |
agattcattgttttgtctatatagttgacttccaaacccaaactttctgatattcctttgagaagttctctacctaatttc |
37224544 |
T |
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