View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_10 (Length: 542)
Name: NF8937_low_10
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 526
Target Start/End: Original strand, 35158591 - 35159105
Alignment:
| Q |
13 |
ataatactggatatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctga |
111 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35158591 |
ataattctggatatgagagcttgcctagctccattggtaaattaaaacacttgagatatctcaatcttgaagataatgaaaaactcaagagcgtccctga |
35158690 |
T |
|
| Q |
112 |
ttcagtgtgcaaactccaaaatttaataaatttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaacttaatcagtctacaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35158691 |
ttcagtgtgcaaactccaaaatttaataaatttggacctcagtggatgcataaagctacaagaattgcccaatggaataggaaacttaatcagtctacaa |
35158790 |
T |
|
| Q |
212 |
caactgcatataaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctagaaatattaatgcttgttgattgtgacaacttgg |
311 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35158791 |
caactacatataaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctagaaatattaacgcttgttgattgtgacaacttgg |
35158890 |
T |
|
| Q |
312 |
agtcattgtttgaaggaatagaagaacttcctagtcttaaatttttggatattacttcttgtaagagtctaaggtcagtgcctcttcatgtcattccaaa |
411 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35158891 |
agtcattgtttgaaggaatagaagaacttccgagtcttaaatttttggatatttattcttgtaagagtctaaggtcagtgcctcttcatgtcattccaaa |
35158990 |
T |
|
| Q |
412 |
cttagagagtttgtctattgatgcctgctataggttgaatttgtcgatgggccatgacaaccaaattgccaagttaaggttaaagttattgtatctcgaa |
511 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35158991 |
cttagagagtttgtctattggtaactgctataggttgaatttgtcgatgggccatgacaaccaaattgccaagttaaggttaaagttattggctctcgaa |
35159090 |
T |
|
| Q |
512 |
tctttgccacaactg |
526 |
Q |
| |
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||||||||||||||| |
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| T |
35159091 |
tctttgccacaactg |
35159105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 29601811 - 29601554
Alignment:
| Q |
23 |
atatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgc |
121 |
Q |
| |
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||||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| | | ||| || || | |||||| ||||||||||||||||| |
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| T |
29601811 |
atatgagagtttgccccgctcaattggtaaattaaaacatttgagatatctcaatcttaagggaaataaagaattgaagagcctccctgattcagtgtgc |
29601712 |
T |
|
| Q |
122 |
aaactccaaaatttaataaatttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaacttaatcagtctacaacaactgcata |
221 |
Q |
| |
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||||| || ||||| || ||||| || |||||| |||| || || |||| |||||||| |||||||| || ||||| || | |||||| |||| |
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| T |
29601711 |
aaacttcagaatttgcaaactttgattcttgagggatgcttaaagcttgaaaaattacccaatgggataggaaatttgatcagccttcgacaactacata |
29601612 |
T |
|
| Q |
222 |
taaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctaga |
279 |
Q |
| |
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|||||||| ||||||||| ||||||||||| |||||||| |||||||||| |||||| |
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|
| T |
29601611 |
taaccacaatgcaatctagttttccagacaaagagattgccaaattgacttatctaga |
29601554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 471
Target Start/End: Original strand, 29744449 - 29744895
Alignment:
| Q |
23 |
atatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgc |
121 |
Q |
| |
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||||||||| || || ||||| |||| ||| ||||| || ||| ||||||||||||| | || ||| || || | |||| | ||||||||||||||||| |
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| T |
29744449 |
atatgagagtttaccccgctcaattgataaattaaagcatttgcgatatctcaatcttcaggacaataaagaattgaagatcctccctgattcagtgtgc |
29744548 |
T |
|
| Q |
122 |
aaactccaaaatttaataaatttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaacttaatcagtctacaacaactgcata |
221 |
Q |
| |
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||||| || ||||| | |||||| ||| |||||||| |||| | || ||||||||||||||||||||| || ||||| || | || || |||| |
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| T |
29744549 |
aaacttcagaatttgcaatctttgaatctcggtggatgcttaaagtttgaaacattgcccaatggaataggaaatttgatcagccttcggcagctacata |
29744648 |
T |
|
| Q |
222 |
taaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctagaaatattaatgcttgttgattgtgacaacttggagtcattgtt |
321 |
Q |
| |
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||||| || |||||||| | ||||||||||| |||||||| |||||||||| | ||||| | ||| | | ||||||||| ||||||| ||| | |
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| T |
29744649 |
taaccgcaatgcaatctgattttccagacaaagagattgccaaattgacttctttagaatttttatctatccattcttgtgacaatttggagtgattact |
29744748 |
T |
|
| Q |
322 |
tgaaggaatagaagaacttcctagtcttaaatttttggatattacttcttgtaagagtctaaggtcagtgcctcttcatgtcattccaaacttagagagt |
421 |
Q |
| |
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|| || ||| | ||||||||| ||||||||| ||| ||||| |||||||| || ||||| ||| |||| |||||||| ||||||||||| || ||| |
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|
| T |
29744749 |
tggagaaat---acaacttcctaatcttaaattgttgaatattgattcttgtaggaatctaaagtctttgccacttcatgttattccaaacttggatagt |
29744845 |
T |
|
| Q |
422 |
ttgtctattgatgcctgctataggttgaatttgtcgatgggccatgacaa |
471 |
Q |
| |
|
|||| ||||||| ||| ||| ||||| ||||| ||||||||||||| |
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|
| T |
29744846 |
ttgtttattgataattgcaataatttgaaattgtctttgggccatgacaa |
29744895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 29751484 - 29751740
Alignment:
| Q |
23 |
atatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgc |
121 |
Q |
| |
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||||||||| || || ||||| |||||||| |||||||| |||| |||||||| |||| | | ||| || || | |||||| |||| |||||||||||| |
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|
| T |
29751484 |
atatgagagttttccccgctcaattggtaaattaaaacatttgagatatctca-tcttaagggaaataaagaattgaagagcctcccagattcagtgtgc |
29751582 |
T |
|
| Q |
122 |
aaactccaaaatttaataaatttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaacttaatcagtctacaacaactgcata |
221 |
Q |
| |
|
||||| || ||||| || ||||| || |||||| |||| || || |||| |||||||| |||||||| || ||||| || | |||||| |||| |
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|
| T |
29751583 |
aaacttcagaatttgcaaactttgattcttgagggatgcttaaagcttgaaaaattacccaatgggataggaaatttgatcagccttcgacaactacata |
29751682 |
T |
|
| Q |
222 |
taaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctaga |
279 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| |||||||| |||||||||| |||||| |
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|
| T |
29751683 |
taaccacaatgcaatctagttttccagacaaagagattgccaaattgacttctctaga |
29751740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 49341745 - 49341823
Alignment:
| Q |
51 |
aattaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgcaaactcca |
129 |
Q |
| |
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|||||||||| || | ||||||||||||||| ||||| || || | |||||| ||||| ||||||||||||||||||| |
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|
| T |
49341745 |
aattaaaacatttaagatatctcaatcttgagaataataaagaattgaagagcctccctaattcagtgtgcaaactcca |
49341823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 32783175 - 32783068
Alignment:
| Q |
23 |
atatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgc |
121 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || |||||||| |||| ||||||||||||| | ||| | || || | |||||| ||||| ||||| ||||| |
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| T |
32783175 |
atatgagagtttgccccgctctattggcaaattaaaacatttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgc |
32783076 |
T |
|
| Q |
122 |
aaactcca |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
32783075 |
aaactcca |
32783068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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