View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_12 (Length: 522)
Name: NF8937_low_12
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 4407115 - 4406975
Alignment:
| Q |
18 |
accaaacacaaccttaaaagcaaccaaggtgagctcatcggcttcaaacgtgattttaattgattggaaagttgttaaccacccagttgcaaatgttaat |
117 |
Q |
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| T |
4407115 |
accaaacacaaccttaaaagcaaccaaggtgagctcatcggcttcaaacgtgattttaattgattggaaagttgttaaccacccagttgcaaatgttaat |
4407016 |
T |
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| Q |
118 |
cttggcagcagcgaacaataataattttatgaggtggttac |
158 |
Q |
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| T |
4407015 |
cttggcagcagcgaacaataataattttatgaggtggttac |
4406975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 346 - 513
Target Start/End: Complemental strand, 4406850 - 4406683
Alignment:
| Q |
346 |
aagtgatgcgttaataaatggtttgttttgacaataacaaagtgccgttaaatcagttcaggccaatagcgatagttttattttttgagaggaagacatt |
445 |
Q |
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| T |
4406850 |
aagtgatgcgttaataaagggtttgttttgacaataacaaagtgccgttaaatcagttcaggccaatagcgataggtttttgttttgggaggaagacatt |
4406751 |
T |
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| Q |
446 |
gatgttgttgttgcggtcatattttcattgtcaatcaaagaatgtagaacttttctgtgctcctcctc |
513 |
Q |
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| T |
4406750 |
gatgttgttgctgcggtcatattttcattgtcaatcaaagaatgtagaacttttctgtgttcatcctc |
4406683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 4406963 - 4406857
Alignment:
| Q |
216 |
tcacaacagctattactcatataaaatatatttcaaaagacacacttaaagtaataagaacagattataaaaggttataatttactagttagttattttt |
315 |
Q |
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| T |
4406963 |
tcacaatagctattactcatataaaatatatttcaaaagacacacttaaagtaataagaacagattataaaaggttataatttactagttagttattttt |
4406864 |
T |
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| Q |
316 |
tagctat |
322 |
Q |
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| T |
4406863 |
tagctat |
4406857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 20619226 - 20619070
Alignment:
| Q |
161 |
taaaatattttttgaaaactaatagtagatttagccaataagaaagnnnnnnnnntcacaacagctattactcatataaaatatatttcaaaagacacac |
260 |
Q |
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| T |
20619226 |
taaaatattttttaaaaattaatagtaaatttaaccaataagaaa----aaaaaatcgcaataactactacacatataaaatatattttataaaatacac |
20619131 |
T |
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| Q |
261 |
ttaaagtaataagaacagattataaaaggttataatttactagttagttattttttagcta |
321 |
Q |
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| T |
20619130 |
ttacaacaaccataacagattataaagagttataatttactaattacttattttttagcta |
20619070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 14950516 - 14950622
Alignment:
| Q |
216 |
tcacaacagctattactcatataaaatatatttcaaaagacacacttaaagtaataagaacagattataaaaggttataatttactagttagttattttt |
315 |
Q |
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||||||| ||||||| ||||||||| || |||| || | |||| ||||| || ||||| || |||||||| ||||||||||||| ||| || ||||| |
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| T |
14950516 |
tcacaacgactattacatatataaaatgtacttcataaaatacacctaaagcaacaagaatggaatataaaagattataatttactaattactttttttt |
14950615 |
T |
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| Q |
316 |
tagctat |
322 |
Q |
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||||||| |
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| T |
14950616 |
tagctat |
14950622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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