View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_14 (Length: 463)
Name: NF8937_low_14
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 5233513 - 5233084
Alignment:
| Q |
19 |
tataattcatggaacaatattcaccaaaatagtttggctttgtaaagtagtagtagtataaattatacaacatctctgcatccaatcttttggtgtaaac |
118 |
Q |
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| T |
5233513 |
tataattcatggaacaatattcaccaaaatagtttggctttgtaaagtagtagta---taaattatacaacatctctgcatccaatcttttggtgtaaac |
5233417 |
T |
|
| Q |
119 |
ttgaactaccagaaaaagatggagcatcgatgttaaatatgaaacactttacacacgtgaatataatgataaaatttaaaccatattaatttggtaattt |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5233416 |
ttgaactaccagaaaaagatggagcatcaatgttaaatatgaaacattttacacacgtgaatataataataaaatttaaaccatattaatttggtaattt |
5233317 |
T |
|
| Q |
219 |
ggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233316 |
ggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcga |
5233217 |
T |
|
| Q |
319 |
actcaaccatgaccgaggaatatgatacctatccaaagatt---nnnnnnnnnnnnnnttactctcataatcttcgattacttacatcattattgtaaag |
415 |
Q |
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| T |
5233216 |
actcaaccatgaccgaggaatatgatacctatccaaagatttaaaaaaaaaaaaaaaattactctcataatcttcgattacttacatcattattgtaaag |
5233117 |
T |
|
| Q |
416 |
taccacgttatatgaaatcttaccatttctgtg |
448 |
Q |
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| T |
5233116 |
taccacgttatatgaaatcttaccatttctgtg |
5233084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 17129208 - 17129075
Alignment:
| Q |
224 |
aatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactca |
323 |
Q |
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| T |
17129208 |
aatcaaatgagcacacttcatgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttca |
17129109 |
T |
|
| Q |
324 |
accatgaccgaggaatatgatacctatccaaaga |
357 |
Q |
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| T |
17129108 |
gccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 52546538 - 52546585
Alignment:
| Q |
244 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
291 |
Q |
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| T |
52546538 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
52546585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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