View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_20 (Length: 420)
Name: NF8937_low_20
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 50467569 - 50467153
Alignment:
| Q |
13 |
cagagattggtgcgaataaaagacctatagtttggactgtttcttggaacttcttcctgctatgaattcctgcattttcttgaattgctccttcgtcatt |
112 |
Q |
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| T |
50467569 |
cagagattggtgcgaataaaagacctatagtttggactgtttcttggaacttcttcctgctatgaattcctgcattttcttgaattgctccttcgtcatt |
50467470 |
T |
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| Q |
113 |
ccattataataggcatggcccctctcctaaatttcgtacacaggtagattactcaatcaaaattacatgaaaaatagtctgaactgtgcagctcaaagct |
212 |
Q |
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| T |
50467469 |
ccattataataggcatggcccctctcctaaatttcgtacacaggtagataactccatcaaaattacataaaaaatagtctgaactgtgcagctcaaagct |
50467370 |
T |
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| Q |
213 |
taagatgcaaatataaggatgaagatatatgcaaaggattactgacacagaacaaaaaatgtaactgataatgactagactcgtgcgaaataattttcca |
312 |
Q |
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| T |
50467369 |
taagatgcaaatataaggatgaagatatatgcaaagaattactgacacagaacaaaaaatgtaactgataatgaatagactcgtgcaaaataattttcca |
50467270 |
T |
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| Q |
313 |
acgttttccaacaatgctaaataac---------taactacagtatttacagctgcaaaatacagagtgaattttagatagtgaaattttgctctaagct |
403 |
Q |
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| T |
50467269 |
acgttttccaacaatgctaaataactagtgtttttaactacagtatttacagctgcaaaatacagagtgaattttagatagtgaaattttgctctaagct |
50467170 |
T |
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| Q |
404 |
ccctttatttctatcaa |
420 |
Q |
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| T |
50467169 |
ccctttatttctatcaa |
50467153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 47393892 - 47394013
Alignment:
| Q |
27 |
aataaaagacctatagtttggactgtttcttggaacttcttcctgctatgaattcctgcattttcttgaattgctccttcgtcattccattataataggc |
126 |
Q |
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||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47393892 |
aataaaagacctatagtttcgactgattcttggaacttc---ctgctatgaattcctgcattttcttgaattgctccttcgtcattccattataataggc |
47393988 |
T |
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| Q |
127 |
atggcccctctcctaaatttcgtac |
151 |
Q |
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| T |
47393989 |
atgacccctctcctaaatttcgtac |
47394013 |
T |
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