View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_23 (Length: 411)
Name: NF8937_low_23
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_23 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 20571925 - 20571514
Alignment:
| Q |
1 |
aatcagcttcgacgaaggtgggtgagtttgaatggaggtagtgaagcggagagtgagttacaaggatttgggagagatggtgataatggtgtgggatcga |
100 |
Q |
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|||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20571925 |
aatcagcttcagcgaaggtgggtgagtttgaattgaggtggtgaagcggagagtgagttacaaggatttgggagagatggtgataatggtgtgggatcga |
20571826 |
T |
|
| Q |
101 |
ggagattgaaggaaaaaggggatgttgatatcaggattgatacataggtgacaatcgtgaatggttttggcttatgtgagagaagcgttttgggttaacg |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20571825 |
ggagattgaagggaaaaggggatgttgatatcaggattgatacataggtgacaatcgtgaatggttttggcttatgtgagagaagcgttttgggttaacg |
20571726 |
T |
|
| Q |
201 |
tgaggggcccaccttgttttattaatttgataaaggaaaacgctatctaagtgaagcaaaacattagcgctttaccgaaagcgctatctttaggaagtag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
20571725 |
tgaggggcccaccttgttttattaatttgataaaggaaaacgctatctaagtgaagcaaaacattagcgccttaccgaaagcgctatctttgggaagtag |
20571626 |
T |
|
| Q |
301 |
aataatagcgtttttg-aaaagcgctatcgaacccaagttttgagtagcctatattagcgctcgaccaaaagtgctatggtaagtttctatgttgccttt |
399 |
Q |
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|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20571625 |
aataatagcgtttttgaaaaaacgctatcgaacccaatttttgagtagcctatattagcattcgaccaaaagtgctatggtaagtttctatgttgccttt |
20571526 |
T |
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| Q |
400 |
ataatagcgttt |
411 |
Q |
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|||||||||||| |
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| T |
20571525 |
ataatagcgttt |
20571514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 411
Target Start/End: Original strand, 14154054 - 14154142
Alignment:
| Q |
323 |
gctatcgaacccaagttttgagtagcctatattagcgctcgaccaaaagtgctatggtaagtttctatgttgcctttataatagcgttt |
411 |
Q |
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|||||| ||||||| |||||||| || |||| |||||| |||| | ||| |||| ||||||| ||| |||| ||||||||||||||||| |
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| T |
14154054 |
gctatctaacccaatttttgagttgcttataatagcgcccgactagaagcgctaaggtaagtctctgtgtttcctttataatagcgttt |
14154142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 25076998 - 25076591
Alignment:
| Q |
1 |
aatcagcttcgacgaaggtgggtgagtttgaatggaggtagtgaagcggagagtgagttacaaggatttgggagagatggtgataatggtgtgggatcga |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
25076998 |
aatcagcttcggcgaaggtgggtgagtttgaatggaggtggtgaagcggagagtgagttacaaggatttggaagagattgtgataatggtgtgggatcga |
25076899 |
T |
|
| Q |
101 |
ggagattgaaggaaaaaggggatgttgatatcaggattgatacataggtgacaatcgtgaatggttttggcttatgtgagagaagcgttttgggttaacg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
25076898 |
ggagattgaagggaaaaggggatgttgatatcaggattgatacataggtgacaatagtgaatggttttggcttatgtgagagaag-ggtttgggttaacg |
25076800 |
T |
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| Q |
201 |
tgaggggcccaccttgttttattaa-tttgataaaggaaaacgctatctaagtgaagcaaaacattagcgctttaccgaaagcgctatctttaggaagta |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |
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| T |
25076799 |
tgaggggcccaccttgttttattaattttgataaaggaaaacgctatctaagtgaagcaaaactttagcgctttaccgaaagcgctatttttgggaagta |
25076700 |
T |
|
| Q |
300 |
gaataatagcgtttttg-aaaagcgctatcgaacccaagttttgagtagcctatattagcgctcgaccaaaagtgctatggtaagtttctatgttgcctt |
398 |
Q |
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| T |
25076699 |
gaataatagcgtttttgaaaaaacgctatcgaacccaattttttagtagcctatattagcgctcgaccaaaagtgctatggtaagtttctatgttgcctt |
25076600 |
T |
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| Q |
399 |
tataatagc |
407 |
Q |
| |
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||||||||| |
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| T |
25076599 |
tataatagc |
25076591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 25134967 - 25134560
Alignment:
| Q |
1 |
aatcagcttcgacgaaggtgggtgagtttgaatggaggtagtgaagcggagagtgagttacaaggatttgggagagatggtgataatggtgtgggatcga |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
25134967 |
aatcagcttcggcgaaggtgggtgagtttgaatggaggtggtgaagcggagagtgagttacaaggatttggaagagattgtgataatggtgtgggatcga |
25134868 |
T |
|
| Q |
101 |
ggagattgaaggaaaaaggggatgttgatatcaggattgatacataggtgacaatcgtgaatggttttggcttatgtgagagaagcgttttgggttaacg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
25134867 |
ggagattgaagggaaaaggggatgttgatatcaggattgatacataggtgacaatagtgaatggttttggcttatgtgagagaag-ggtttgggttaacg |
25134769 |
T |
|
| Q |
201 |
tgaggggcccaccttgttttattaa-tttgataaaggaaaacgctatctaagtgaagcaaaacattagcgctttaccgaaagcgctatctttaggaagta |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |
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| T |
25134768 |
tgaggggcccaccttgttttattaattttgataaaggaaaacgctatctaagtgaagcaaaactttagcgctttaccgaaagcgctatttttgggaagta |
25134669 |
T |
|
| Q |
300 |
gaataatagcgtttttg-aaaagcgctatcgaacccaagttttgagtagcctatattagcgctcgaccaaaagtgctatggtaagtttctatgttgcctt |
398 |
Q |
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||||||||||||||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25134668 |
gaataatagcgtttttgaaaaaacgctatcgaacccaattttttagtagcctatattagcgctcgaccaaaagtgctatggtaagtttctatgttgcctt |
25134569 |
T |
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| Q |
399 |
tataatagc |
407 |
Q |
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||||||||| |
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| T |
25134568 |
tataatagc |
25134560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 5562531 - 5562588
Alignment:
| Q |
354 |
ttagcgctcgaccaaaagtgctatggtaagtttctatgttgcctttataatagcgttt |
411 |
Q |
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||||||| |||||||||||||||| | | || ||| |||||||||| ||||||||||| |
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| T |
5562531 |
ttagcgcccgaccaaaagtgctatagaaggtatctgtgttgcctttttaatagcgttt |
5562588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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