View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8937_low_24 (Length: 380)

Name: NF8937_low_24
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8937_low_24
NF8937_low_24
[»] chr6 (1 HSPs)
chr6 (1-380)||(17301099-17301481)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 17301481 - 17301099
Alignment:
Q  1 aggtttaatagagtaaattttcgggaaatatttgtaaatttgtgttacctcgttaggattatctataatgattgaagctgtgagcaacccattgagtgac 100  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||||| | |||||||| | ||||||||| ||||||||||||||||||||| |||    
T  17301481 aggtttaatagagtacattttcgggaaatctttgtaaattcgtgttacctcatgaggattatatgtaatgattgcagctgtgagcaacccattgagcgac 17301382  T
Q  101 ttaactgagggactgacgttgagtttttcatggatgaagttgaaagcattgagagcttggtcgaacatgcctgcttgaccataggctgcgatagcgcgag 200  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||    
T  17301381 ttaactgagggagtgacgttgagtttttcatggctgaagttgaaagcattgagagcttggtcgaacatgccggcttgaccatagaaagcgatagcgcgag 17301282  T
Q  201 agatgaaacgttcagcttttctatttgtttcaactttggtctgggggagagggagaggggatttcagtgccgaggagttcttctgactcctcataggaca 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17301281 agatgaaacgttcagcttttctatttgtttcagctttggtctgggggagagggagaggggatttcagtgccgaggagttcttctgactcctcataggaca 17301182  T
Q  301 gttgtggttgc---ggaagacgagacggggagggtcatccagtactgaggagtagtttcgagacaggaatgttgagtagtgac 380  Q
    |||| ||| ||   || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17301181 gttgcggtcgcggtggtagacgagacggggagggtcatccagtactgaggagtagtttcgagagaggaatgttgagtagtgac 17301099  T

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