View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8937_low_27 (Length: 323)

Name: NF8937_low_27
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8937_low_27
NF8937_low_27
[»] chr7 (3 HSPs)
chr7 (70-308)||(21977910-21978149)
chr7 (1-69)||(20571462-20571530)
chr7 (1-62)||(14154126-14154187)
[»] chr3 (1 HSPs)
chr3 (71-229)||(16079345-16079503)
[»] chr1 (1 HSPs)
chr1 (71-229)||(31110376-31110534)
[»] scaffold0430 (1 HSPs)
scaffold0430 (5-73)||(12295-12363)
[»] chr2 (1 HSPs)
chr2 (1-72)||(5562572-5562643)
[»] chr5 (3 HSPs)
chr5 (8-69)||(31308781-31308842)
chr5 (33-64)||(25076552-25076583)
chr5 (33-64)||(25134521-25134552)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 70 - 308
Target Start/End: Original strand, 21977910 - 21978149
Alignment:
Q  70 ttaccaagaagtaaatacactaataccaatatttaacacatttctcctacctccacagatgcaacagattcatctatttgcatattctcttcaacattat 169  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  21977910 ttaccaagaagtaaatacactaataccagtatttaacatatttctcctacctccacagatgcaacagattcatccatttgcatattctcttcaagattat 21978009  T
Q  170 tttccatctgaaacacattcaaataagtatgtcacctttcactattcaattaaatgtaccaattaatgctc-tttttctgctgcctacccagattatgac 268  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  21978010 tttccatctgaaacagattcaaacaagtatgtcacctttcactattcaattaaatgtaccaattaatgctcttttttctgctgcctacacagattatgac 21978109  T
Q  269 atccacattattttcgaagcaaatatttacagctaaattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21978110 atccacattattttcgaagcaaatatttacagctaaattt 21978149  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20571530 - 20571462
Alignment:
Q  1 cctttataatagcgtttatgtaaaaacactattaaaatactgctataaaaagccaaaattgtagcagtg 69  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  20571530 cctttataatagcgtttatgtaaaaacgctattaaaatactgctataaaaagccaaaattgtagtagtg 20571462  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14154126 - 14154187
Alignment:
Q  1 cctttataatagcgtttatgtaaaaacactattaaaatactgctataaaaagccaaaattgt 62  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  14154126 cctttataatagcgtttatgtagaaacgctattaaaatactgctataaaaagccaaaattgt 14154187  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 16079503 - 16079345
Alignment:
Q  71 taccaagaagtaaatacactaataccaatatttaacacatttctcctacctccacagatgcaacagattcatctatttgcatattctcttcaacattatt 170  Q
    |||||||||| ||||||| |||||    ||||||||| ||||||  ||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16079503 taccaagaagaaaatacaataatattggtatttaacaaatttcttatacctccacagatgcaacagattcatccatctgcatattctcttcaacattatt 16079404  T
Q  171 ttccatctgaaacacattcaaataagtatgtcacctttcactattcaattaaatgtacc 229  Q
    |||||||| |||||| |||||| ||  |||||||||||||||||||| |||||||||||    
T  16079403 ttccatctcaaacacgttcaaacaaaaatgtcacctttcactattcagttaaatgtacc 16079345  T

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Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 31110534 - 31110376
Alignment:
Q  71 taccaagaagtaaatacactaataccaatatttaacacatttctcctacctccacagatgcaacagattcatctatttgcatattctcttcaacattatt 170  Q
    |||||||||| ||||||| |||||    ||||||| | ||||||  ||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  31110534 taccaagaagaaaatacaataatattggtatttaataaatttcttatacctccacggatgcaacagattcatccatctgcatattctcttcaacattatt 31110435  T
Q  171 ttccatctgaaacacattcaaataagtatgtcacctttcactattcaattaaatgtacc 229  Q
    |||||||| |||||| |||||| ||  ||||||||||||||| |||| |||||||||||    
T  31110434 ttccatctcaaacacgttcaaacaaaaatgtcacctttcactgttcagttaaatgtacc 31110376  T

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Target: scaffold0430 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 12295 - 12363
Alignment:
Q  5 tataatagcgtttatgtaaaaacactattaaaatactgctataaaaagccaaaattgtagcagtgttac 73  Q
    ||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||| ||||||||    
T  12295 tataatagcgtttatatagaaacgctattaaaatgccgctataaaaagccaaaattgtagtagtgttac 12363  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5562572 - 5562643
Alignment:
Q  1 cctttataatagcgtttatgtaaaaacactattaaaatactgctataaaaagccaaaattgtagcagtgtta 72  Q
    ||||| ||||||||||||||||||||| |||||||| |   ||||| ||||||||||||||||| |||||||    
T  5562572 cctttttaatagcgtttatgtaaaaacgctattaaatttgcgctattaaaagccaaaattgtagtagtgtta 5562643  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 31308842 - 31308781
Alignment:
Q  8 aatagcgtttatgtaaaaacactattaaaatactgctataaaaagccaaaattgtagcagtg 69  Q
    |||||||||||||||||||| |||||||| |   ||||| ||||||||||||||||| ||||    
T  31308842 aatagcgtttatgtaaaaacgctattaaatttgcgctattaaaagccaaaattgtagtagtg 31308781  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 25076583 - 25076552
Alignment:
Q  33 taaaatactgctataaaaagccaaaattgtag 64  Q
    ||||||||||||||||||||||||||||||||    
T  25076583 taaaatactgctataaaaagccaaaattgtag 25076552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 25134552 - 25134521
Alignment:
Q  33 taaaatactgctataaaaagccaaaattgtag 64  Q
    ||||||||||||||||||||||||||||||||    
T  25134552 taaaatactgctataaaaagccaaaattgtag 25134521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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