View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_31 (Length: 305)
Name: NF8937_low_31
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 41739528 - 41739823
Alignment:
| Q |
1 |
aacgtcaaagtactcaaaatacaaaaagcaccagaagcagtacatgaaactgaccttccaagtataaattgaggactacttgtatgagccatcatccaaa |
100 |
Q |
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| T |
41739528 |
aacgtcaaagtactcaaaatacaaaaagcaccagaagcagtacatgaaactgaccttccaagtataaattgaggactgcttgtatgagccatcatccaaa |
41739627 |
T |
|
| Q |
101 |
atttcatcaattcatcccttagcctatcagtaaccttctcaaactcttgttgtttttcctttgagtttgattcttctctcaaagcttcttcattgatctt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739628 |
atttcatcaattcatctcttagcctatcagtaaccttctcaaactcttgttgtttttcctttgagtttgattcttctctcaaagcttcttcattgatctt |
41739727 |
T |
|
| Q |
201 |
atacttcaattccatgtaatgttttatcttttgtaaacacaaaacagaagaagtcatgatcatcaacaaaataaccataagaaacataataacacc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739728 |
atacttcaattccatgtaatgttttatcttttgtaaacacaaaacagaagaagtcatgatcatcaacaaaataaccataagaaacataataacacc |
41739823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 41746226 - 41745935
Alignment:
| Q |
1 |
aacgtcaaagtactcaaaatacaaaaagcaccagaagcagtacatgaaactgaccttccaagtataaattgaggactacttgtatgagccatcatccaaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| | |
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| T |
41746226 |
aacgtcaaagtactcaaaacacaaaaagcaccagaagcagtacatgaaactgaccttccaagtagaaattgaggaccgctagtatgagccatcatccaga |
41746127 |
T |
|
| Q |
101 |
atttcatcaattcatcccttagcctatcagtaaccttctcaaactcttgttgtttttcctttgagtttgattcttctctcaaagcttcttcattgatctt |
200 |
Q |
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|||||||||||||||| |||| | |||||||||| || | | |||| ||| |||||| ||||| ||||||||||||||| |||||||||| ||| |
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| T |
41746126 |
atttcatcaattcatctcttaacttatcagtaactttgttatactcatgtcgtttttgttttga------ttcttctctcaaagcatcttcattgacctt |
41746033 |
T |
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| Q |
201 |
atacttcaattccatgtaatgttttatcttttgtaaacacaaaacagaagaagtcatgatcatcaacaaaataaccataagaaacataataacaccat |
298 |
Q |
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||||||||| |||||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41746032 |
atacttcaactccatgtaatgtttcatctttggtaaacacaaagcagaagaaatcatgatcatcaacaaaataaccataagaaacataataacaccat |
41745935 |
T |
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