View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_32 (Length: 301)
Name: NF8937_low_32
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_32 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 19423092 - 19422805
Alignment:
| Q |
14 |
ttaaaaggaccaatcattttcatgtatttaaaggttgttattagaaatgaaagttatttgtttcagtttccatttcataagtcttgagaatttatttcct |
113 |
Q |
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| T |
19423092 |
ttaaaaggaccaatcattttcatgtatttaaaggttgttattagaaatgaaaattatttgtttcagtttcattttcataagtcttgagaatttatttcct |
19422993 |
T |
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| Q |
114 |
atttccatcaaattcaaatgttctttcgttgttaacagaaactcttacatcataaaaaccttacctgttgtcatgattgcagacattatggctgcaggag |
213 |
Q |
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| T |
19422992 |
atttacaacaaattctaatgttcttttgttgttaacaggaacttttacagcataaaaaccttacctgttgtcatgattgcagacattatagctgcaggag |
19422893 |
T |
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| Q |
214 |
accaagttgggtggtaagattttataattgttgcaactgcagatatgtgtggacaagacattgatgttcctgaaattatgttatagtc |
301 |
Q |
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| T |
19422892 |
accaagttgggtggtaagattttataatagttgcaactgcagatatgtgtggacaagacattgatgttcctgaaatgatgttatagtc |
19422805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 19430190 - 19430057
Alignment:
| Q |
168 |
aaaaccttacctgttgtcatgattgcagacattatggctgcaggagaccaagttgggtggtaagattttataattgttgcaactgcagatatgtgtggac |
267 |
Q |
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| T |
19430190 |
aaaaacttacctgttgtcattattgcagacataatggctgcaggagtccaggttgggtggtaagatttgataattgctgccactgcagatatgtgtggac |
19430091 |
T |
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| Q |
268 |
aagacattgatgttcctgaaattatgttatagtc |
301 |
Q |
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| T |
19430090 |
aagacattgatgttcctgaaatgatattatagtc |
19430057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 19438753 - 19438620
Alignment:
| Q |
168 |
aaaaccttacctgttgtcatgattgcagacattatggctgcaggagaccaagttgggtggtaagattttataattgttgcaactgcagatatgtgtggac |
267 |
Q |
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| T |
19438753 |
aaaaacttacctgttgtcattattgcagacataatggctgcaggagtccaggttgggtggtaagatttgataattgctgccactgcagatatgtgtgggc |
19438654 |
T |
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| Q |
268 |
aagacattgatgttcctgaaattatgttatagtc |
301 |
Q |
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| T |
19438653 |
aagacattgatgtttctgaaatgatattatagtc |
19438620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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