View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8937_low_39 (Length: 280)

Name: NF8937_low_39
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8937_low_39
NF8937_low_39
[»] chr3 (2 HSPs)
chr3 (1-232)||(2356829-2357061)
chr3 (152-232)||(49433790-49433871)
[»] chr1 (1 HSPs)
chr1 (152-232)||(36079907-36079988)
[»] chr2 (3 HSPs)
chr2 (152-232)||(490801-490882)
chr2 (152-232)||(493061-493142)
chr2 (167-232)||(9787863-9787928)
[»] chr4 (2 HSPs)
chr4 (223-270)||(54776447-54776494)
chr4 (225-270)||(54792631-54792676)
[»] chr6 (1 HSPs)
chr6 (59-89)||(32821648-32821678)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2357061 - 2356829
Alignment:
Q  1 aaaagtgtgatacctcctccattcatttgttctgccgtcattcctcgttcataaggagtgcaagacctccttctttgtaactctcgggtnnnnnnnnnt- 99  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||               
T  2357061 aaaagtgtgatacctcctccattcctttgttctgccatcattcctcgttcataagatgtgcaagacctccttctttgtaactctcgggtaaaaaaaaaaa 2356962  T
Q  100 gtttcttggccaaagtccaattctcccttaatcattttgtggctgcacctattttgcttattcacacaacccatgatttaaaggcaagtggcacatcaat 199  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356961 gtttcttggccaaagtccaattctcccttaatcattttgcggctgcacctattttgcttattcacacaacccatgatttaaaggcaagtggcacatcaat 2356862  T
Q  200 ataatccatagaagctcaattaagttttctttc 232  Q
    | ||||||||||||| |||||||||||||||||    
T  2356861 aaaatccatagaagcacaattaagttttctttc 2356829  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 49433871 - 49433790
Alignment:
Q  152 tttgcttattcacac-aacccatgatttaaaggcaagtggcacatcaatataatccatagaagctcaattaagttttctttc 232  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||  |||||||| |||||||||||| ||||    
T  49433871 tttgcttattcacaccaacccatgatttaaaggcaagtggcacataaataaaatatatagaagcacaattaagttttatttc 49433790  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 36079988 - 36079907
Alignment:
Q  152 tttgcttattcacac-aacccatgatttaaaggcaagtggcacatcaatataatccatagaagctcaattaagttttctttc 232  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||| ||||    
T  36079988 tttgcttattcacaccaacccatgatttaaaggcaagtggcacataaataaaatctatagaagcacaattaagttttatttc 36079907  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 490801 - 490882
Alignment:
Q  152 tttgcttattcacac-aacccatgatttaaaggcaagtggcacatcaatataatccatagaagctcaattaagttttctttc 232  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||  |||||||| |||||||||||| ||||    
T  490801 tttgcttattcacaccaacccatgatttaaaggcaagtggcacataaataaaatttatagaagcacaattaagttttatttc 490882  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 493061 - 493142
Alignment:
Q  152 tttgcttattcacac-aacccatgatttaaaggcaagtggcacatcaatataatccatagaagctcaattaagttttctttc 232  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||| |||| |||||||| |||||||||||| ||||    
T  493061 tttgcttattcacaccaacccatgatataaaggcaagtggcacataaataaaatctatagaagcacaattaagttttatttc 493142  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 9787863 - 9787928
Alignment:
Q  167 aacccatgatttaaaggcaagtggcacatcaatataatccatagaagctcaattaagttttctttc 232  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||||    
T  9787863 aacccataatttaaaggcaagtgacacatcaataaaattcatagaagcacaattaagttttctttc 9787928  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 54776494 - 54776447
Alignment:
Q  223 gttttctttcatccccctctctaatctctacttccttgatgtgcctca 270  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||||    
T  54776494 gttttctttcatcccactttctaatctctacttgcttgatgtgcctca 54776447  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 54792631 - 54792676
Alignment:
Q  225 tttctttcatccccctctctaatctctacttccttgatgtgcctca 270  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||    
T  54792631 tttctttcatcccactttctaatctctacttgcttgatgtgcctca 54792676  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 89
Target Start/End: Complemental strand, 32821678 - 32821648
Alignment:
Q  59 tgcaagacctccttctttgtaactctcgggt 89  Q
    |||||||||||||||||||||||||||||||    
T  32821678 tgcaagacctccttctttgtaactctcgggt 32821648  T

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