View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8937_low_4 (Length: 569)
Name: NF8937_low_4
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 160 - 560
Target Start/End: Original strand, 39245184 - 39245584
Alignment:
| Q |
160 |
ttgatagataataaatttatgcgacatgaaaaaacaaactaatttatgcagtgaaactttaagtggtaagaaatactactaaaaactaacctcaatgaag |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245184 |
ttgatagataataaatttatgcgacatgaaaaaacaaactaatttatgcagtgaaactttaagtggtaagaaatactactaaaaactaacctcaatgaag |
39245283 |
T |
|
| Q |
260 |
aactgtgattaattctataccttccgttactagtatactcttcaatggtcacctcatgcagcacttttttatcatttgggacatttaatttccactttct |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
39245284 |
aactgtgattaattctataccttccgttactagtatactcttcaatgctcacctcatgcagctctttttgatcatttgggacatttaatttccactttct |
39245383 |
T |
|
| Q |
360 |
cagagcagaaacaaagacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaa |
459 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245384 |
catagcagcaacaaagacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaa |
39245483 |
T |
|
| Q |
460 |
aaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaagtataa |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39245484 |
aaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataa |
39245583 |
T |
|
| Q |
560 |
t |
560 |
Q |
| |
|
| |
|
|
| T |
39245584 |
t |
39245584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 160 - 552
Target Start/End: Original strand, 39251181 - 39251579
Alignment:
| Q |
160 |
ttgatagataataaatttatgcgacatgaaaaaacaaactaatttatgcagtgaaactttaagtggtaagaaatactactaaaaactaacctcaatgaag |
259 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
39251181 |
ttgatagataataaatttatgtgacatgaaaaaacaaactaatttatgcagtgaaactttaagtggtaagaaatagtactaaaaactaacctcaatgaag |
39251280 |
T |
|
| Q |
260 |
aactgtgattaattctataccttccgttactagtat---actcttcaatggtcacctcatgcagcacttttttatcatttgggacatttaatttccactt |
356 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| | ||||| |||||||||||||||||| |||||||| |
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| T |
39251281 |
agctgtgattaattctataccttcctttactagtattatactcttcaatgctcacctcatgcaactcttttggatcatttgggacatttaagttccactt |
39251380 |
T |
|
| Q |
357 |
tctcagagcagaaacaaagacttgaaccat----tctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaa |
452 |
Q |
| |
|
||||| |||| ||||| ||||||||||| ||| ||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
39251381 |
tctcaaggcagccacaaaaacttgaaccatatattctgattaaagggcttccagaaggtaatctatgtctataaagtggtgttccaaacaaaaacaccaa |
39251480 |
T |
|
| Q |
453 |
tgttgaaaaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctcca |
552 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
39251481 |
tgttgaaaaaacaagcaagatggttggaatcccataaccaagggc-aaaccaacattgtcttgtatgtagactaatcctgtttcggctaaaatgcctcca |
39251579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 244 - 553
Target Start/End: Original strand, 39260864 - 39261173
Alignment:
| Q |
244 |
actaacctcaatgaagaactgtgattaattctataccttccgttactagtatactcttcaatggtcacctcatgcagcacttttttatcatttgggacat |
343 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||| |||| ||||||||| |
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|
| T |
39260864 |
actaaccttagtgaagaactgtgattaattctataccttcctttactagtatactcttcaatgctcacctcatgtagctcttttgaatcaattgggacat |
39260963 |
T |
|
| Q |
344 |
ttaatttccactttctcagagcagaaacaaagacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaa |
443 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || || |||| |
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|
| T |
39260964 |
ttaacttccactttctcatagcagcaacaaagacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacac |
39261063 |
T |
|
| Q |
444 |
aaacaccaatgttgaaaaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaa |
543 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||| || |
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|
| T |
39261064 |
aaacaccaatatggaaacaacaagcaatatggttggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaa |
39261163 |
T |
|
| Q |
544 |
atggctccaa |
553 |
Q |
| |
|
|||| ||||| |
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|
| T |
39261164 |
atggttccaa |
39261173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 39244895 - 39245038
Alignment:
| Q |
18 |
agggatcatttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaagg |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39244895 |
agggatcatttttgtcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaagg |
39244994 |
T |
|
| Q |
118 |
aaactacaaacatttgtacatgttttaattatatacttatgatt |
161 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
39244995 |
aaactacagacatttgtacatgttttaattatatacttatgatt |
39245038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 39250830 - 39250972
Alignment:
| Q |
18 |
agggatcatttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaagg |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39250830 |
agggatcatttttgtcatttgttttgtttcctcaatttgtgtcacagtacaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaagg |
39250929 |
T |
|
| Q |
118 |
aaactacaaacatttgtacatgttttaattatatacttatgat |
160 |
Q |
| |
|
|| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
39250930 |
aatctacaaacatttgtacatgttataactatatacttatgat |
39250972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 39260324 - 39260419
Alignment:
| Q |
24 |
catttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaa |
119 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||| |
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|
| T |
39260324 |
catttttgtcatttgtttggtttcttcaatttgtgtcacagtacaaagcatccatggtgaagtttggccagtcttcacagcagctttgtcaaggaa |
39260419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 39177360 - 39177464
Alignment:
| Q |
22 |
atcatttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaaac |
121 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||| || |||||||||||||| || |||||| ||||||| | || |||||||||||||||| |
|
|
| T |
39177360 |
atcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggcgacgtttggccggtctttatagctgctttgtcaaggaaac |
39177459 |
T |
|
| Q |
122 |
tacaa |
126 |
Q |
| |
|
||||| |
|
|
| T |
39177460 |
tacaa |
39177464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 39194144 - 39194248
Alignment:
| Q |
22 |
atcatttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaaac |
121 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||| || |||||||||||||||||||||||| | ||||| || |||||||||||||||| |
|
|
| T |
39194144 |
atcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaac |
39194243 |
T |
|
| Q |
122 |
tacaa |
126 |
Q |
| |
|
||||| |
|
|
| T |
39194244 |
tacaa |
39194248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 39215817 - 39215921
Alignment:
| Q |
22 |
atcatttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaaac |
121 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||| || |||||||||||| ||||||||||| | ||||| || |||||||||||||||| |
|
|
| T |
39215817 |
atcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccattgtgaagtttggcctgtctttgtagccgctttgtcaaggaaac |
39215916 |
T |
|
| Q |
122 |
tacaa |
126 |
Q |
| |
|
||||| |
|
|
| T |
39215917 |
tacaa |
39215921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 39223434 - 39223538
Alignment:
| Q |
22 |
atcatttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaaac |
121 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||| || ||||||||||| |||||||||||| | |||||| || |||||||| ||||||| |
|
|
| T |
39223434 |
atcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccacggtgaagtttggcctgtcttcgtagccgctttgtctaggaaac |
39223533 |
T |
|
| Q |
122 |
tacaa |
126 |
Q |
| |
|
||||| |
|
|
| T |
39223534 |
tacaa |
39223538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 521
Target Start/End: Original strand, 39239493 - 39239722
Alignment:
| Q |
292 |
gtatactcttcaatggtcacctcatgcagcacttttttatcatttgggacatttaatttccactttctcagagcagaaacaaagacttgaaccattctag |
391 |
Q |
| |
|
||||||||||| || ||| |||||| ||| | |||||||| | ||||||| | ||||| ||||| | ||||| ||||||||||||| ||| || | |
|
|
| T |
39239493 |
gtatactcttccatactcagctcatgtagctcctttttatcttctgggacacgtgccttccattttcttatagcagccacaaagacttgaagcatccttg |
39239592 |
T |
|
| Q |
392 |
ttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataacc |
491 |
Q |
| |
|
||| ||| || || | ||||||||| ||||||||| ||||||||| || |||||||||||| ||||||| |||| |||||||||| ||||| || |
|
|
| T |
39239593 |
ttatagggctgcctggaggcaatttgtgtctataatatggtgttcctaataaaaacaccaatattgaaaatgcaaggccaatggttggaaggccatatcc |
39239692 |
T |
|
| Q |
492 |
aagggcaaaaccaacattgtcttgtatgta |
521 |
Q |
| |
|
||| | |||||| ||||||||||||||| |
|
|
| T |
39239693 |
aagttcccaaccaatattgtcttgtatgta |
39239722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 39239106 - 39239201
Alignment:
| Q |
27 |
ttttatcatttgttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaaact |
122 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||||| || ||||||||||||| ||| |||| ||||||| | || ||||||||||||||||| |
|
|
| T |
39239106 |
ttttgtcatttgcttagtttcctcaatttgtgtcactgtacaaagcatccatgttgatttttgtccggtctttatagccgctttgtcaaggaaact |
39239201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 449
Target Start/End: Original strand, 39194425 - 39194524
Alignment:
| Q |
350 |
tccactttctcagagcagaaacaaagacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacac |
449 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| | ||||||||||| ||| || || || ||||||||||| ||||| | ||| ||||| | ||||||||| |
|
|
| T |
39194425 |
tccactttctcatagctgccacaaagacttggagcattctagttatagggctgcctgagggcaatttatgcctatacaatggagttcctaccaaaaacac |
39194524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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