View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_40 (Length: 266)
Name: NF8937_low_40
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_40 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 41739260 - 41739505
Alignment:
| Q |
21 |
aaaactaataggactttctcgaatcaccactagcctatcagtccaatacccttccacttgaaaaattctcttacagctccttttcctcacatttggacac |
120 |
Q |
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| T |
41739260 |
aaaacttataggactttctcgaatcaccactagcctatcagtccaatacccttccacttgaaaaattctcttacagctccttttcctcacatttggacac |
41739359 |
T |
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| Q |
121 |
ctatatctaacagcaacaaaccatctcaaagcaggggcaatagtcccaacaccaacagcagctacttgaactataagaataaagattgtagaccatttgt |
220 |
Q |
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| T |
41739360 |
ctatatctaacagcaacaaaccatctcaaagcaggagcaatagtcccaacaccaacagcagctacttgaactataagaataaagattgtagaccatttgt |
41739459 |
T |
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| Q |
221 |
aatcacattcaccagtgcaaaatttaaccgtccaagacatcaaata |
266 |
Q |
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| T |
41739460 |
aatcacattcaccagtgcaaaatttaaccgtccaagacatcaaata |
41739505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 41746494 - 41746252
Alignment:
| Q |
21 |
aaaactaataggactttctcgaatcaccactagcctatcagtccaatacccttccacttgaaaaattctcttacagctccttttcctcacatttggacac |
120 |
Q |
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||||||||| ||||| ||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||| | ||||||| |||||||||||||||| |
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| T |
41746494 |
aaaactaatcggactctctcgaaacaccactaaactatcagtccagtaaccttctacttgaaaaattctcttgcgactcctttccctcacatttggacac |
41746395 |
T |
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| Q |
121 |
ctatatctaacagcaacaaaccatctcaaagcaggggcaatagtcccaacaccaacagcagctacttgaactataagaataaagattgtagaccatttgt |
220 |
Q |
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| T |
41746394 |
ctatatttaacagcagcaaaccacctaaaagcaggagcaatagtaccaacgccaacagcagcaacttgaactataagaatcaagattatagaccatttgt |
41746295 |
T |
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| Q |
221 |
aatcacattcaccagtgcaaaatttaaccgtccaagacatcaa |
263 |
Q |
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| T |
41746294 |
aatcactttcaccagcacaaaatttaaccgaccaagacatcaa |
41746252 |
T |
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