View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_43 (Length: 264)
Name: NF8937_low_43
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_43 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 38751899 - 38752162
Alignment:
| Q |
1 |
aagaaattgagaacacatgttggaattttccatctggaaccaactttgaagatcttgagggagaatattagtaggttttccaaagttcttctcattaggg |
100 |
Q |
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| T |
38751899 |
aagaaattgagaacacatgttggaattttccatctggaaccaactttgaagatcttgagggagaatattagtaggttttccaaagttcttctcattaggg |
38751998 |
T |
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| Q |
101 |
tttgcagaatttggggcattgatacacctttgagctgtttgctctctcagaaaagctagctgtgcttgtaaattgaccacctacaaagatcaagaagaag |
200 |
Q |
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| T |
38751999 |
ttttcagaatttggggcattgagacacctttgagctgcttgctctctcagaaaagctagctgtgcttgtaaattgaccacctacaaagatcaggaagaag |
38752098 |
T |
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| Q |
201 |
aaaatgcatttattagtaaattcaccacctgcatagatcaacacaatgcttatgtattttttct |
264 |
Q |
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| T |
38752099 |
aaaatgcatttattagttaattcaccacctgcatagatcaacacaatgcttatgtattttttct |
38752162 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 30904559 - 30904515
Alignment:
| Q |
20 |
ttggaattttccatctggaaccaactttgaagatcttgagggaga |
64 |
Q |
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| T |
30904559 |
ttggaattttccacatggaaccaagtttgaagatcttgagggaga |
30904515 |
T |
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