View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_49 (Length: 216)
Name: NF8937_low_49
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 4781267 - 4781442
Alignment:
| Q |
14 |
gaaagagcatggacgggtctacaaagacctagacgagatggcaaagaaatttgacatttttatttccaatttgaagtatatcacggagacaaatgcaaag |
113 |
Q |
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| T |
4781267 |
gaaagagcatggacgggtctacaaagacctagacgagatggcaaagaaatttgacatttttatttccaatttgaagtatatcacggagacaaatgcaaag |
4781366 |
T |
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| Q |
114 |
agaaaatcatctaatggtttccttcttggtcttacaaattttactgattggagctccgaggagttttaacaaagat |
189 |
Q |
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| T |
4781367 |
agaaaatcatctaatggtttccttcttggtcttacaaattttactgattggagctccgaggagtttcaagaaagat |
4781442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 4784244 - 4784421
Alignment:
| Q |
14 |
gaaagagcatggacgggtctacaaagacctagacgagatggcaaagaaatttgacatttttatttccaatttgaagtatatcacggagacaaatgcaaag |
113 |
Q |
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|||||| |||||| ||||||| ||||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||| || | |||| || |
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| T |
4784244 |
gaaagaccatggaagggtctataaagacctagaagagaaggcaaagaaatttgacatttttgtgtccaatttgaagtatatcacagaaagtaatggcaat |
4784343 |
T |
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| Q |
114 |
agaaa---atcatctaatggtttccttcttggtcttacaaattttactgattggagctccgaggagttttaacaaaga |
188 |
Q |
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| T |
4784344 |
agaaagtcatcacctcatggcttccttcttggtcttaccaactttgctgattggagcccccaagagtttaaagaaaga |
4784421 |
T |
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