View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8937_low_7 (Length: 563)
Name: NF8937_low_7
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 22535188 - 22534660
Alignment:
| Q |
19 |
tgtgctattgggattggaataaagagtggtatattgtacataaaaagaaatatggagctagccctgattgatttaagtacccaaactagtgaagacattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22535188 |
tgtgctattgggattggaataaagagtggtatattgtacataaaaagaaatatggagctagccctgattgatttaagtacccaaactagtgaagacattg |
22535089 |
T |
|
| Q |
119 |
gagttgaggcagagtcggcttgccagaagattgtaatgtataaggaaaaccttcttccttttccttttggagaaacgaataattaatttgtttttgcagt |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22535088 |
gagttgaggcagagttggcttgccagaagattgtaatgtataaggaaaaccttcttccttttccttttggagaaacgaataattaatttgtttttgcagt |
22534989 |
T |
|
| Q |
219 |
cttatctcaaagcattcggccataagttttataaacgatgctatcaagttatttatatcttgtcagatgctcataacttattgattgtcaaatgctcttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534988 |
cttatctcaaagcattcggccataagttttataaacgatgctatcaagttatttatatcttgtcagatgctcataacttattgattgtcaaatgctcttt |
22534889 |
T |
|
| Q |
319 |
tcatttgaatattgttctgctttgtgtgtgtattgttgagtgctggcgctttagtttgtttccgttgtctgtaatacaacattaacaatctgctataatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
22534888 |
tcatttgaatattgttctgctttgtgtgtgtattgttgagtgttggcgctttagtttttgtccgttgtctgtaatacaacattaacaatctgctataatc |
22534789 |
T |
|
| Q |
419 |
acttgataagttattgttttgatttaatacaaattggtagcatattttattgatctagattgccttgtttactctactatatttctgcattatcatggtt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534788 |
acttgataagttattgttttgatttaatacaaattggtagcatattttattgatctagattgccttgtttactctactatatttctgcattatcatggtt |
22534689 |
T |
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| Q |
519 |
aaatttatgttcatatatgcatcttacct |
547 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
22534688 |
aaatttatgttcatatatgcatcttacct |
22534660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 2e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 37830907 - 37831187
Alignment:
| Q |
20 |
gtgctattgggattggaataaagagtggtatattgtacataaaaagaaatatggagctagccctgattgatttaagtacccaaactagtgaaga-cattg |
118 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37830907 |
gtgctattgggattggaataaagagtgctatattctacataaaagaaaatatggagctagccctgattgatttaagtacccaaactagtgaagaacattg |
37831006 |
T |
|
| Q |
119 |
gagttgaggcagagtcggcttgccagaagattgtaatgtataaggaaaaccttcttccttttccttttggagaaacgaataattaatttgtttttgcagt |
218 |
Q |
| |
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||||||||| |||||||| |||| |||||||||||| | |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
37831007 |
gagttgaggtagagtcggtttgcatgaagattgtaatttctaagaaaaaccttcttccttttccttttggaggaatgaataattaatttgtttttgcagt |
37831106 |
T |
|
| Q |
219 |
cttatctcaaagcattcggccataagttttataaacgatgctatcaagttatttatatcttgtcagatgctcataacttat |
299 |
Q |
| |
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||||||| |||||| || ||||| || ||||| |||||||| |||||||||||||||||||||||| ||| ||||| |||| |
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| T |
37831107 |
cttatctgaaagcactcagccatgaggtttatgaacgatgccatcaagttatttatatcttgtcagttgcccataatttat |
37831187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 37832389 - 37832128
Alignment:
| Q |
20 |
gtgctattgggattggaataaagagtggtatattgtacataaaaagaaatatggagctagccctgattgatttaagtacccaaactagtgaagacattgg |
119 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
37832389 |
gtgctattgggattggaataaagggtgatatattttacataaaa-gaaatatggagctagccctggttgattttagtacccaaaccagtgaagacattgg |
37832291 |
T |
|
| Q |
120 |
agttgaggcagagtcggcttgccagaagattgtaatgtataaggaaaaccttcttccttttccttttggagaaacgaataattaatttgtttttgcagtc |
219 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||| |
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| T |
37832290 |
agttgaggcagagtcggtttgcaagaagattgtaatttataa-caaaaccttcttccttttccttttggaggaatcaatgattaatttgtttttgcagtc |
37832192 |
T |
|
| Q |
220 |
ttatctcaaagcattcggccataagttttataaacgatgctatcaagttatttatatcttgtcag |
284 |
Q |
| |
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||| |||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||| |
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| T |
37832191 |
tta-ctcaaagcattcagccatgacgtttatgaacgatgctatcaagttatttatatcttgtcag |
37832128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 545
Target Start/End: Complemental strand, 37831483 - 37831397
Alignment:
| Q |
459 |
catattttattgatctagattgccttgtttactctactatatttctgcattatcatggttaaatttatgttcatatatgcatcttac |
545 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
37831483 |
cataattttttgatctagatttccttgtttactctactctatttgtgcattataatggttaaatttatgttcatacatgcatcttac |
37831397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 16781076 - 16781157
Alignment:
| Q |
464 |
tttattgatctagattgccttgtttactctactatatttctgcattatcatggttaaatttatgttcatatatgcatcttac |
545 |
Q |
| |
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|||| ||||||| |||| ||||||||||||||| |||||||||||| |||||||| ||| |||||| ||| ||||||||||| |
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| T |
16781076 |
tttactgatctatattgtcttgtttactctactctatttctgcattctcatggtttaatctatgtttatacatgcatcttac |
16781157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 18138693 - 18138612
Alignment:
| Q |
464 |
tttattgatctagattgccttgtttactctactatatttctgcattatcatggttaaatttatgttcatatatgcatcttac |
545 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||| || ||| |||| | || |||||| ||||| ||||||||||| |
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| T |
18138693 |
tttattgatctagattgctttgtttactctgctctatttatgtattctcatattgaagtttatgatcatacatgcatcttac |
18138612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 37832052 - 37832019
Alignment:
| Q |
327 |
atattgttctgctttgtgtgtgtattgttgagtg |
360 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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|
| T |
37832052 |
atattgttctgctttgtgtgtgtattgttaagtg |
37832019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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