View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8937_low_9 (Length: 560)
Name: NF8937_low_9
Description: NF8937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8937_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Original strand, 41037720 - 41038244
Alignment:
| Q |
17 |
gcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
41037720 |
gcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacactgtgattccacccaattcagaaagtcaatattttggag |
41037819 |
T |
|
| Q |
117 |
tagttgattcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41037820 |
tagttgattcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgt |
41037919 |
T |
|
| Q |
217 |
caactctataatttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41037920 |
caactctataatttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacaca |
41038019 |
T |
|
| Q |
317 |
ttgagtgttgttgtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41038020 |
ttgagtgttgttgtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctat |
41038119 |
T |
|
| Q |
417 |
ctgctgcttcaataactggtataccacatgatatccattcatggtcaattagcacctcagaattgaaaacaactacaagcagcgcatcaaacaactcttt |
516 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038120 |
ctgctgcttcagtaactggtatagcacatgatatccattcatggtcaattagcacttcagaattgaaaacaactacaagcagcgcatcaaacaactcttt |
41038219 |
T |
|
| Q |
517 |
atttctaaataaagaccctgctagt |
541 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
41038220 |
atttctaaataaagaccctgctagt |
41038244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 40 - 501
Target Start/End: Original strand, 41065933 - 41066388
Alignment:
| Q |
40 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
139 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| ||||| |
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|
| T |
41065933 |
aactgatggtttggtcttctttattgcaccacaagacactaagattccacccaactcagaaagtcaatatcttggagtagttgattcaaaaaatacttac |
41066032 |
T |
|
| Q |
140 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
41066033 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattggaatcgatgtcaactctttaatttctctcaaga |
41066132 |
T |
|
| Q |
240 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
339 |
Q |
| |
|
|||| || ||||||| | ||||| |||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
41066133 |
ccgtgaaa------tgggaattcgcgagtggatcattgactaaagtaagtaaagcatatgactcttcctctaacacattgagtgttgttgtcacttatgc |
41066226 |
T |
|
| Q |
340 |
caatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggtata |
439 |
Q |
| |
|
|||||| ||| || |||||||||| | || |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |
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|
| T |
41066227 |
caatggaaaattttctaccattgctcaaatcgttgatttgaaagctgtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggtttt |
41066326 |
T |
|
| Q |
440 |
ccacatgatatccattcatggtcaattagcacctcagaattgaaaacaactacaagcagcgc |
501 |
Q |
| |
|
|||| || ||||||||||||||| | | ||| ||||| |||||||||||| |||||||||| |
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|
| T |
41066327 |
gcacacgacatccattcatggtcattgaccacttcagacttgaaaacaactgcaagcagcgc |
41066388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 40 - 510
Target Start/End: Original strand, 41043785 - 41044249
Alignment:
| Q |
40 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
139 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| |||||||| | | ||||||||| |
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|
| T |
41043785 |
aactgatggagtgatcttttttattgcaccacaagacactgtgattccaccccactcaacaagtgcacgttttggagtagttgatatagaaaatgcttac |
41043884 |
T |
|
| Q |
140 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| | ||||||||||||||| |||||||| ||||||||| ||||| |
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|
| T |
41043885 |
aatcaatttgttggtgtagagtttgacctttataccaatattcttgatcccaatatgaaacatattggaatcgatatcaactctttaatttcgagcaaga |
41043984 |
T |
|
| Q |
240 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
339 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||||||||| |||||| ||| |
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|
| T |
41043985 |
tcgtggaatggg------aatgggtgagtggatcattgactcaagtaagtgtagcctatgactttccctctaagacattgagtgttcttgtcacttatga |
41044078 |
T |
|
| Q |
340 |
caatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggtata |
439 |
Q |
| |
|
|||| ||||||||| |||| ||||| | ||| ||||||||||||| ||||||||||||||| ||||| |||||||| ||| |||||||||||||| | | |
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|
| T |
41044079 |
caatcgcaaaattgctacccttgctcaaataattgatttgaaaaccgtgctccccaacacgattaggcttggtctagctggtgcttcaataactgcaaca |
41044178 |
T |
|
| Q |
440 |
ccacatgatatccattcatggtcaattagcacctcagaattgaaaacaactacaagcagcgcatcaaacaa |
510 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| |
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|
| T |
41044179 |
gcacacgatatctattcatggtcaattagcatttcagaattgaaaacaactacaagtagtgcatcagacaa |
41044249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
131 |
aatgcttacaatcaatttgttggtgtagagtttga |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 41047360 - 41047304
Alignment:
| Q |
123 |
attcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaata |
179 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41047360 |
attcaaataatgcttttaataaatttgttggtgtagagtttgacacttatgccaata |
41047304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 44 - 510
Target Start/End: Complemental strand, 8496198 - 8495738
Alignment:
| Q |
44 |
gatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttacaatc |
143 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||| | | ||||||||| |
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|
| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgattccacccaactcagaaagtctacatcttggagtagttgattcaaaaagttcttacaatc |
8496099 |
T |
|
| Q |
144 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagatcgt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
8496098 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgagacatattggaatcgatgtcaactctttaatttctctcaagaccgt |
8495999 |
T |
|
| Q |
244 |
ggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgccaat |
343 |
Q |
| |
|
| ||||| ||| | ||||| |||||||| | ||||||| ||||| ||||||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
8495998 |
------gaattggcaatttgcgagtggatcattgactaaagtaagcatagcttatgactcttcctcaaacacattgagtgttgttgtcacttatgccaat |
8495905 |
T |
|
| Q |
344 |
ggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggtataccac |
443 |
Q |
| |
|
|| ||| || ||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||| |
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|
| T |
8495904 |
ggaaaattttccaccattgctcaaatagttgatttgaaaacagtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggttttgcac |
8495805 |
T |
|
| Q |
444 |
atgatatccattcatggtcaattagcacctcagaattgaaaacaactacaagcagcgcatcaaacaa |
510 |
Q |
| |
|
| || ||||||||||||||| | | ||| ||||| |||||||||||| ||||||| |||||| |||| |
|
|
| T |
8495804 |
acgacatccattcatggtcattgaccacttcagacttgaaaacaactgcaagcagtgcatcagacaa |
8495738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 368 - 510
Target Start/End: Complemental strand, 8488368 - 8488226
Alignment:
| Q |
368 |
atagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggtataccacatgatatccattcatggtcaatta |
467 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||| | |||| || ||||||||||||||| | | |
|
|
| T |
8488368 |
atagttgatttgaaaacagtgctccctaacaaggttaggtttggtctatctggtgcttcaataactggttttgcacacgacatccattcatggtcattga |
8488269 |
T |
|
| Q |
468 |
gcacctcagaattgaaaacaactacaagcagcgcatcaaacaa |
510 |
Q |
| |
|
||| ||||| |||||||||||| ||||||| |||||| |||| |
|
|
| T |
8488268 |
ccacttcagacttgaaaacaactgcaagcagtgcatcagacaa |
8488226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 21489359 - 21489406
Alignment:
| Q |
282 |
aagtaagtatagcctatgactctccctctaacacattgagtgttgttg |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489359 |
aagtaagtataatctatgactctccctctaacacattgagtgttgttg |
21489406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 21482869 - 21482904
Alignment:
| Q |
131 |
aatgcttacaatcaatttgttggtgtagagtttgac |
166 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21482869 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21482904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 21493021 - 21493056
Alignment:
| Q |
131 |
aatgcttacaatcaatttgttggtgtagagtttgac |
166 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21493021 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21493056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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