View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8938_high_1 (Length: 1386)

Name: NF8938_high_1
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8938_high_1
NF8938_high_1
[»] chr2 (16 HSPs)
chr2 (24-1375)||(6915171-6916518)
chr2 (1124-1222)||(10543505-10543603)
chr2 (1124-1222)||(10471307-10471405)
chr2 (1124-1222)||(28106207-28106305)
chr2 (1142-1222)||(27966389-27966469)
chr2 (1124-1222)||(10859023-10859121)
chr2 (1235-1291)||(10492777-10492833)
chr2 (1234-1286)||(28105350-28105402)
chr2 (1228-1291)||(10463585-10463648)
chr2 (1228-1275)||(10507349-10507396)
chr2 (1240-1291)||(10860707-10860758)
chr2 (1229-1291)||(10474161-10474223)
chr2 (1235-1291)||(7476566-7476622)
chr2 (1240-1291)||(10848803-10848854)
chr2 (1143-1205)||(9081351-9081413)
chr2 (1234-1291)||(7478731-7478788)
[»] chr7 (15 HSPs)
chr7 (494-615)||(15039269-15039390)
chr7 (368-492)||(15038314-15038438)
chr7 (250-362)||(15038055-15038167)
chr7 (763-867)||(15040241-15040345)
chr7 (145-248)||(15037825-15037928)
chr7 (686-759)||(15040064-15040137)
chr7 (1124-1222)||(15044800-15044898)
chr7 (1037-1127)||(15043971-15044061)
chr7 (1224-1295)||(15045570-15045641)
chr7 (872-927)||(15041840-15041895)
chr7 (30-84)||(15036138-15036192)
chr7 (977-1039)||(15043792-15043854)
chr7 (83-145)||(15037676-15037738)
chr7 (630-684)||(15039923-15039977)
chr7 (1322-1375)||(15047553-15047606)
[»] chr8 (3 HSPs)
chr8 (714-783)||(43895529-43895598)
chr8 (714-783)||(44305953-44306022)
chr8 (1239-1290)||(44307022-44307073)
[»] chr5 (2 HSPs)
chr5 (843-921)||(35856854-35856932)
chr5 (1124-1222)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 1259; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 1259; E-Value: 0
Query Start/End: Original strand, 24 - 1375
Target Start/End: Complemental strand, 6916518 - 6915171
Alignment:
Q  24 cctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcatt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||||    
T  6916518 cctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacatt 6916419  T
Q  124 gccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  6916418 gccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttca----gcataacaggttctaatata 6916323  T
Q  224 actggtctggaagctgtgtaacactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtca 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6916322 actggtctggaagctgtgtaacactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtca 6916223  T
Q  324 agacaactcggagattttcaactggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaat 423  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6916222 agacaactcggagattttgaactggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaat 6916123  T
Q  424 agcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgtcct 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6916122 agcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgccct 6916023  T
Q  524 ccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaacaccatact 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6916022 ccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatact 6915923  T
Q  624 ccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacggaaagtagg 723  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6915922 ccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacgaaaagtagg 6915823  T
Q  724 atcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattc 823  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915822 atcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattc 6915723  T
Q  824 atagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctctt 923  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915722 atagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctctt 6915623  T
Q  924 caatgtcattcatctcattagaatgcatctcaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgac 1023  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915622 caatgtcgttcatctcattagaatgcatctgaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgac 6915523  T
Q  1024 gccctcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctga 1123  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6915522 accctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcgggacttccagtcagctga 6915423  T
Q  1124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtacccccg 1223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6915422 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccagaagtggttgtacccccg 6915323  T
Q  1224 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 1323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915322 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 6915223  T
Q  1324 atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 1375  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915222 atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1124 - 1222
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  1124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1222  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1124 - 1222
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  1124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1222  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1124 - 1222
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  1124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1222  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 1142 - 1222
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  1142 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1222  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1124 - 1222
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  1124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1222  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1235 - 1291
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  1235 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1291  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1234 - 1286
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  1234 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 1286  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1228 - 1291
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  1228 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1291  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1228 - 1275
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  1228 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 1275  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1240 - 1291
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  1240 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1291  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1229 - 1291
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  1229 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1291  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1235 - 1291
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  1235 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1291  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1240 - 1291
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  1240 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1291  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1143 - 1205
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  1143 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 1205  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1234 - 1291
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  1234 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 1291  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 2e-52; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 494 - 615
Target Start/End: Original strand, 15039269 - 15039390
Alignment:
Q  494 ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg 593  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15039269 ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg 15039368  T
Q  594 gctttccaactgtagcatcaac 615  Q
    ||||||||||||||||||||||    
T  15039369 gctttccaactgtagcatcaac 15039390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 368 - 492
Target Start/End: Original strand, 15038314 - 15038438
Alignment:
Q  368 gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg 467  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  15038314 gagttggcagcttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctg 15038413  T
Q  468 acccagcaggaagtggttcaatata 492  Q
    |||||||||| ||||||||||||||    
T  15038414 acccagcagggagtggttcaatata 15038438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 250 - 362
Target Start/End: Original strand, 15038055 - 15038167
Alignment:
Q  250 tctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaactgga 349  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  15038055 tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcggagattttcaacggga 15038154  T
Q  350 tgtccaatcaagg 362  Q
    |||||||| ||||    
T  15038155 tgtccaattaagg 15038167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 763 - 867
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
Q  763 ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat 862  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||||||     
T  15040241 ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa 15040340  T
Q  863 gtatc 867  Q
    |||||    
T  15040341 gtatc 15040345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
Q  145 cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa 244  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||| |||||||||  |||||||||||| ||||||    
T  15037825 cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa 15037924  T
Q  245 cact 248  Q
    ||||    
T  15037925 cact 15037928  T

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Target: chr7; HSP #6
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 686 - 759
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
Q  686 tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 759  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15040064 tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 15040137  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1124 - 1222
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  1124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1222  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #8
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 1037 - 1127
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  1037 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 1127  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1224 - 1295
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  1224 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 1295  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 872 - 927
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
Q  872 gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat 927  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15041840 gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat 15041895  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
Q  30 cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac 84  Q
    |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  15036138 cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac 15036192  T

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Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 977 - 1039
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
Q  977 ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt 1039  Q
    ||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  15043792 ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
Q  83 acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc 145  Q
    ||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| ||||||    
T  15037676 acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc 15037738  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 630 - 684
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
Q  630 taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt 684  Q
    |||||| || |||||| ||||||||||| |||||||||||||||||||| |||||    
T  15039923 taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt 15039977  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1322 - 1375
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  1322 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 1375  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 714 - 783
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
Q  714 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 783  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  43895529 ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac 43895598  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 714 - 783
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
Q  714 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 783  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  44305953 ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac 44306022  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1239 - 1290
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  1239 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 1290  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 843 - 921
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
Q  843 taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc 921  Q
    |||| ||||||||||||||||| || || | ||||||||||||| || ||||| |||| ||||| |||||||| |||||    
T  35856932 taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc 35856854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1124 - 1222
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  1124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 1222  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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