View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8938_high_10 (Length: 261)
Name: NF8938_high_10
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_high_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 10244990 - 10244743
Alignment:
| Q |
19 |
tttatgacacacttgttacttgtatgtttcattgtaaatttccaacaaattgcctcttcagaacatgtgggactaaatttgtcc--nnnnnnnngagatt |
116 |
Q |
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| T |
10244990 |
tttatgacacacttgttacttgtatgtttcattgtaaatttccaacaaattgactcttcagaacatgtgggactaaatttgtccaaaaaaaaaagagatt |
10244891 |
T |
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| Q |
117 |
aatttaaaatctaaaattaatataaatggcacatgaagatgtattattgatcatgatcatgtgtca-----nnnnnnngagagaaaatcatgatcatgtg |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
10244890 |
aatttaaaatctaaaattaatataaaaggcacatgaagatgtattattgatcatgatc--gtgtcattttttttttttgagagaaaatcatgatcatgtg |
10244793 |
T |
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| Q |
212 |
tcatgttagcatgttaatcccctaaaaaatatctgagacctaaaatgaat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10244792 |
tcatgttagcatgttaatcccctaaaaaatatctgagacctaaaatgaat |
10244743 |
T |
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