View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8938_high_12 (Length: 239)
Name: NF8938_high_12
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 28289217 - 28289413
Alignment:
| Q |
22 |
caaacaacagtggttgccggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttg |
121 |
Q |
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| T |
28289217 |
caaacaacagtggttgccggaaccttaggctatttggctccagaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttg |
28289316 |
T |
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| Q |
122 |
ttaccttggagatcacaaccggaaggaaagccgttgaagttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatgg |
218 |
Q |
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| T |
28289317 |
ttgccttggagatcacaactggacggaaagctgttgaagttatgagggataaagatggagataagggattgattgagtgggtttgggatcatcatgg |
28289413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 28279351 - 28279548
Alignment:
| Q |
21 |
tcaaacaacagtggttgccggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggtt |
120 |
Q |
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| T |
28279351 |
tcaaacaacagtgattgctggaaccttaggatatttggctccagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggggtt |
28279450 |
T |
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| Q |
121 |
gttaccttggagatcacaaccggaaggaaagccgttgaagttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatgg |
218 |
Q |
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| T |
28279451 |
gtcgtcttggagatcacaactggaaggaaagccgttgaagttatggaggacaaagatggagataagggattgattgagtgggtttgggatcattatgg |
28279548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 28264519 - 28264323
Alignment:
| Q |
22 |
caaacaacagtggttgccggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttg |
121 |
Q |
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| T |
28264519 |
caaacaacagtggttgccggaaccttaggctatatggctccggaatatataagtacaggtaagactagcaaagagtcagatgtgtatagttttggggttg |
28264420 |
T |
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| Q |
122 |
ttaccttggagatcacaaccggaaggaaagccgttgaagttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatgg |
218 |
Q |
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| T |
28264419 |
ttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaaggtgaagataagggattaattgactgggtttgggatcattatgg |
28264323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 28304521 - 28304340
Alignment:
| Q |
37 |
gccggaaccttaggctatttggctcccgaatatataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgttaccttggagatca |
136 |
Q |
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|||||||| || |||||| | ||||| |||||| | |||||||| | ||| || |||||||| ||||| || ||||||||| | ||| ||| ||||| | |
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| T |
28304521 |
gccggaacattcggctatctagctccagaatatgtgagtacaggaagggcgagtaaagagtcagatgtttatagttttgggatagttgtcttagagataa |
28304422 |
T |
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| Q |
137 |
caaccggaaggaaagccgttgaagttatgagggataaagatggagataagggattgattgagtgggtttgggatcattatgg |
218 |
Q |
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| T |
28304421 |
cctccggaaaaaaagctactgaagttatgaaggagaaagatgaagagaagggaatgattgagtgggtttgggatcattatgg |
28304340 |
T |
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