View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8938_high_5 (Length: 479)
Name: NF8938_high_5
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 32615075 - 32614614
Alignment:
| Q |
1 |
ctaatattttgaacattacttcgttttgtgaactaaactgtatgtgtttttgcgatccgtttgacagctgaagtagaagctttgacggtgcctgattcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32615075 |
ctaatattttgaacattacttcgttttgtgaactgaactgtatgtgtttttgcgatccgtttgacagctgaagtagaagctttgacggtgcctgattcat |
32614976 |
T |
|
| Q |
101 |
gcaagattcacgaaaaagtgaactcacagattttcaccggcatgatggcctttgtgatgggactcataaccatggtgagaatgacacgaaacatgccgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32614975 |
gcaagattcacgaaaaagtgaactcacagattttcaccggcatgatggcctttgtgatgggactcataaccatggtgagaatgacacgaaacatgccgaa |
32614876 |
T |
|
| Q |
201 |
gaggctcactgatgccaacttctactcaaattctgtttactctggtggtgactttaaaactgaagactctaatgaccaattgaccaaccctaccatttcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32614875 |
gaggctcactgatgccaacttctactcaaattctgtttactctggtggtgactttaaaactgaagactctaatgaccaattgaccaaccctaccatttcg |
32614776 |
T |
|
| Q |
301 |
gctcaagagtttatgactgttatgaagcgcatggctgagttggaagataaaatgggcaacatgaacacaaccacttgcatgccacctgagaaggaagaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32614775 |
gctcaagagtttatgactgttatgaagcgcatggctgagttggaagataaaatgggcaacatgaacacaaccacttgcatgccacctgagaaggaagaaa |
32614676 |
T |
|
| Q |
401 |
tgcttaatgctgctataagtcgcgctgatgctcttgagcaagaacttatggcaaccaagaag |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32614675 |
tgcttaatgctgctataagtcgcgctgatgctcttgagcaagaacttatggcaaccaagaag |
32614614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University