View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8938_high_7 (Length: 301)

Name: NF8938_high_7
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8938_high_7
NF8938_high_7
[»] chr6 (3 HSPs)
chr6 (101-283)||(10244576-10244754)
chr6 (16-105)||(10244218-10244314)
chr6 (103-149)||(28587610-28587656)
[»] chr1 (1 HSPs)
chr1 (101-149)||(43670691-43670739)
[»] chr7 (4 HSPs)
chr7 (101-148)||(44858102-44858149)
chr7 (101-149)||(3565657-3565705)
chr7 (105-144)||(37327296-37327335)
chr7 (101-147)||(29366347-29366393)
[»] chr3 (4 HSPs)
chr3 (105-151)||(25189688-25189734)
chr3 (101-145)||(14741938-14741982)
chr3 (105-149)||(38216373-38216417)
chr3 (105-148)||(39450615-39450658)
[»] scaffold0157 (1 HSPs)
scaffold0157 (105-146)||(21424-21465)
[»] chr4 (3 HSPs)
chr4 (105-146)||(12499012-12499053)
chr4 (107-148)||(44362907-44362948)
chr4 (105-148)||(18879379-18879422)
[»] chr8 (3 HSPs)
chr8 (101-148)||(20771712-20771759)
chr8 (101-148)||(20781506-20781553)
chr8 (105-146)||(3207900-3207941)
[»] chr2 (1 HSPs)
chr2 (103-149)||(34921979-34922025)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 10244576 - 10244754
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaagccttaataaaatgagtaaattttgattttggtcttgtaaannnnnnnnnnnnnnn 200  Q
    |||||||||||||||||||| |||  || |||||||||||||||| ||||||||||||||||||||||||||||||    |||||                   
T  10244576 attttgcaaaatagtgaaaacaggaagaccaaaactgcaattaagtcttaataaaatgagtaaattttgattttgg----gtaaaatttttgtttttttc 10244671  T
Q  201 ccaccattttcaaatctaaaatcatcattattttgacttgnnnnnnnttatcattatttttcatcaataatattcatcttagg 283  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| |||||    
T  10244672 ccaccattttcaaatctaaaatcatcattattttgacttgaaaaaaattatcattatttttcatcaataatattcattttagg 10244754  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 10244218 - 10244314
Alignment:
Q  16 agagatgtaatggtcaagtaattatgaaataaatataggaataaatat-------gtgttaataaaaggcttaattgctgtcttgatcctctatttt 105  Q
    |||||||||| |||||||||||||||||||||||| |||||| |||||       |||||||||||||| |||||||| || ||||||  |||||||    
T  10244218 agagatgtaaaggtcaagtaattatgaaataaataaaggaatgaatatgttttcagtgttaataaaaggtttaattgcagttttgatctactatttt 10244314  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 28587656 - 28587610
Alignment:
Q  103 tttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcctt 149  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  28587656 tttgcaaaatggtgaaaacagggggaccaaaactgcaattaagcctt 28587610  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 43670739 - 43670691
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcctt 149  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  43670739 attttgcaaaagagtgaaaatagggggaccaaaactgcaattaagcctt 43670691  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 44858102 - 44858149
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcct 148  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  44858102 attttgcaaaatggtaaaaatagggggatcaaaactgcaattaagcct 44858149  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 3565657 - 3565705
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcctt 149  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||    
T  3565657 attttgcaaaatagtgaaaataggagaaccaaaactgcaattaagcctt 3565705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 37327335 - 37327296
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaa 144  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  37327335 tgcaaaatggtgaaaatagggggatcaaaactgcaattaa 37327296  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 29366393 - 29366347
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcc 147  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  29366393 attttgcaaaattgtgaaaatagggggaccaaaactacaattaagcc 29366347  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 25189688 - 25189734
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaagccttaa 151  Q
    |||||||| || |||||||||||| ||||||||||||||||||||||    
T  25189688 tgcaaaatggtaaaaatagggggaccaaaactgcaattaagccttaa 25189734  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 14741982 - 14741938
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaag 145  Q
    |||||||||| | ||||||||||||||| ||||||||||||||||    
T  14741982 attttgcaaagtggtgaaaatagggggaccaaaactgcaattaag 14741938  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 38216373 - 38216417
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaagcctt 149  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||    
T  38216373 tgcaaaatggtgaaaatagggggaccaaaactgcaattaaacctt 38216417  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 39450658 - 39450615
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaagcct 148  Q
    |||||||| |||||||||||||||  ||||||||||||||||||    
T  39450658 tgcaaaatggtgaaaatagggggacaaaaactgcaattaagcct 39450615  T

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Target: scaffold0157 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 21424 - 21465
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaagc 146  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  21424 tgcaaaatggtgaaaatagggggatcaaaactgcaaataagc 21465  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 12499053 - 12499012
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaagc 146  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  12499053 tgcaaaatggtgaaaatagggggatcaaaactgcaaataagc 12499012  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 44362948 - 44362907
Alignment:
Q  107 caaaatagtgaaaatagggggatcaaaactgcaattaagcct 148  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  44362948 caaaatggtgaaaatagggggaccaaaactgcaattaagcct 44362907  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 18879379 - 18879422
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaagcct 148  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||    
T  18879379 tgcaaaatggtgaaaatagggggaccaaaattgcaattaagcct 18879422  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 20771712 - 20771759
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcct 148  Q
    ||||||||||||  |||||||||||||| ||||||| |||||||||||    
T  20771712 attttgcaaaatgatgaaaatagggggaccaaaactacaattaagcct 20771759  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 20781506 - 20781553
Alignment:
Q  101 attttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcct 148  Q
    ||||||||||||  |||||||||||||| ||||||| |||||||||||    
T  20781506 attttgcaaaatgatgaaaatagggggaccaaaactacaattaagcct 20781553  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 3207900 - 3207941
Alignment:
Q  105 tgcaaaatagtgaaaatagggggatcaaaactgcaattaagc 146  Q
    ||||||||||||||||||||||||  |||| |||||||||||    
T  3207900 tgcaaaatagtgaaaatagggggacaaaaagtgcaattaagc 3207941  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 34922025 - 34921979
Alignment:
Q  103 tttgcaaaatagtgaaaatagggggatcaaaactgcaattaagcctt 149  Q
    |||||||||||||||||| | ||||| ||||||| ||||||||||||    
T  34922025 tttgcaaaatagtgaaaacatggggaccaaaactacaattaagcctt 34921979  T

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