View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8938_high_9 (Length: 279)
Name: NF8938_high_9
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 50551207 - 50550944
Alignment:
| Q |
1 |
taaacagtggtgtgataatagagaaaatgggaaaagggagtgaggttaggagcttcaagggtataaatagaattttagaatgtattatgcacacgtacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50551207 |
taaacagtggtgtgataatagagaaaatgggaaaagggagtgaggttaggagcttcaagggtataaatagaattttagaatgtattatgcacacgtacgt |
50551108 |
T |
|
| Q |
101 |
gccattattattattatt---ttagggaaaatgaaattaaattgggcggcatatcacgttaaaatatgtcagaagaaattttgttgctgatttaaattac |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50551107 |
gccattattattattattattttagggaaaatgaaatttaattgggcggcatatcacgttaaaatatgtcagaagaaattttgttgctgatttaaattac |
50551008 |
T |
|
| Q |
198 |
gaaactagcctaccactaattatgaaccctatgttgatgtcattggggttttgctgcaaagtaat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
50551007 |
gaaactagcctaccactaattatgaaccctatgatgatgtca-tggggttttgctgcaaagtaat |
50550944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University