View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8938_low_18 (Length: 301)

Name: NF8938_low_18
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8938_low_18
NF8938_low_18
[»] chr8 (1 HSPs)
chr8 (1-284)||(26405863-26406151)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 26406151 - 26405863
Alignment:
Q  1 attgaagatgtacctgaagtttgcaggagagaagaccccaatccagtcatgtattgatggatttggattattatatttgagtgtgacccattctgtattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406151 attgaagatgtacctgaagtttgcaggagagaagaccccaatccagtcatgtattgatggatttggattattatatttgagtgtgacccattctgtattt 26406052  T
Q  101 tgtccctat-----aataataacattgaaattcattcatattcttcttagtcaataataagtcacatgacatggca-----------atgataccttgaa 184  Q
    |||||||||     |||||||||||||||||||||           ||||| |||||||||| |||||||||||||           |||||||||||||    
T  26406051 tgtccctataatataataataacattgaaattcat-----------ttagtgaataataagtgacatgacatggcaaatatccatccatgataccttgaa 26405963  T
Q  185 gccaagtagattaggagtggctttgatagaagcatctggatgaagagcaaaaagggtattatgaatagcaacttttgagagtggttgatgcaaatcttca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26405962 gccaagtagattaggagtggctttgatagaagcatctggatgaagagcaaaaagggtattatgaatagcaacttttgagagtggttgatgcaaatcttca 26405863  T

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