View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8938_low_21 (Length: 272)
Name: NF8938_low_21
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 36354202 - 36354445
Alignment:
| Q |
17 |
agatgaactgggaaagaaaaatattcccagaaatagtagctattgttgtatcttgccatagatatggaaattgttcctgttaatgaagtaaggatatttc |
116 |
Q |
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| T |
36354202 |
agatgaactgggaaagaaaaatattcccagaaatagtagctattgttgtatcttgccatagatatggaaattgttcctgttaatgaagtaaggatatttc |
36354301 |
T |
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| Q |
117 |
ggatataaaaatgttataatctaaa-tgttgtccaataggaagatgccacaatgct----gtcgaggtcgaccaaaacgtgtgaagaagagaaaatcaag |
211 |
Q |
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| T |
36354302 |
ggatataaaaatgttataatctaaagtgttgtccaataggaggatgccacaatgctgtacgtcgaggtcgaccaaaacgtgtgaagaagagaaaatcaag |
36354401 |
T |
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| Q |
212 |
gatgnnnnnnncaactagaatgcattagtttcggtttgtgtctg |
255 |
Q |
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| T |
36354402 |
gatgaaaaaaacaactagaatgcattagtttcggtttgtgtctg |
36354445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 36355488 - 36355557
Alignment:
| Q |
17 |
agatgaactgggaaagaaaaatattcccagaaatagtagctattgttgtatcttgccatagatatggaaa |
86 |
Q |
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||||||| ||||| ||| |||| |||||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
36355488 |
agatgaattgggatagagaaattttcccaagagtagtagctattgttgtatctggccatagatatggaaa |
36355557 |
T |
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