View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8938_low_24 (Length: 240)
Name: NF8938_low_24
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 43714274 - 43714496
Alignment:
| Q |
18 |
tattgaactagtctataattcaaatgaattgtggtttcttgtcaaaatcaaatgaatacttctactggatgaacaataacatcactttaagcaaaagttc |
117 |
Q |
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| T |
43714274 |
tattgaactagtctataattcaaatgaattgtggtttcttgtcaaaatcaaatgaatacttctactggatgaacaataacatcactttaagcaaaagttc |
43714373 |
T |
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| Q |
118 |
tgggcaggaatcatactttgtttcttatttataatgaaccgcagaagtttaactactttgaaactaattatgaagtttcagggcctaactcagcctcaaa |
217 |
Q |
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| T |
43714374 |
tgggcaggaatcatactttgtttcttatttataataaaccgcagaagtttaactactttgaaactaattatgaagtttcagggcctaactcagcctcaaa |
43714473 |
T |
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| Q |
218 |
aaattgacttgtaagtcaaagat |
240 |
Q |
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| T |
43714474 |
aaattgacttgtaagtcaaagat |
43714496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 232
Target Start/End: Complemental strand, 52893398 - 52893237
Alignment:
| Q |
71 |
gaatacttctactggatgaacaataacatcactttaagcaaaagttctgggca-ggaatcatactttgtttcttatttataatgaaccgcagaagtttaa |
169 |
Q |
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| T |
52893398 |
gaatacttctactgggtgaacaataacatcactttaagcaaaagttctgggcagggaatcatactttgtttcttatttatactgaattgcagaaactt-g |
52893300 |
T |
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| Q |
170 |
ctactttgaaactaattatgaagtttcagggcctaactcagcctcaaaaaattgacttgtaag |
232 |
Q |
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| T |
52893299 |
ctactttgaaactaattacgaagtttcagggcctaattcagcctcacaaaattgacttataag |
52893237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 52893466 - 52893421
Alignment:
| Q |
19 |
attgaactagtctataattcaaatgaattgtggtttcttgtcaaaa |
64 |
Q |
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| T |
52893466 |
attgaactagtctataattcaaataaactatggtttcttgtcaaaa |
52893421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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