View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8938_low_27 (Length: 239)
Name: NF8938_low_27
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 28745643 - 28745557
Alignment:
| Q |
137 |
acagcgaaacaaaaatgacaatctctcaaaacgacgacgacgattctttcacaaacgacgatcgacgcatgagtctcatcgactttt |
223 |
Q |
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| T |
28745643 |
acagcgaaacgacaatgacaatctctcaaaacgacgacgacgattctttcacaaacgatgatcgacgcatgagtctcatcgactttt |
28745557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 28745781 - 28745673
Alignment:
| Q |
6 |
ccaatccaaatacaccctactttacactgttttggcgcga--ctctcac----at---attatctca-tctcagtcagttacaaatattcaagcaatagc |
95 |
Q |
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| T |
28745781 |
ccaatccaaatacaccctactttacaatattttggcgcgagggtttcaccctaattcaattatctcagtctcagtcagttacaaatattcaagcaatagc |
28745682 |
T |
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| Q |
96 |
gaaaccgca |
104 |
Q |
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| T |
28745681 |
gaaaccgca |
28745673 |
T |
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