View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8938_low_3 (Length: 785)
Name: NF8938_low_3
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 182 - 712
Target Start/End: Complemental strand, 33735432 - 33734904
Alignment:
| Q |
182 |
tatgcatgatattcacatgaagaaactccacaaccaataatgtttcgggtgttcaacaacaaacatgaaacctttcaacttcaagtggaagattcattac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33735432 |
tatgcatgatattcacatgaagaaactccacaaccaataatgtttcgggtgttcaacaacaaacatgaaacctttcaacttcaagtggaagatttattac |
33735333 |
T |
|
| Q |
282 |
gaatgagagtgttctatactttgatatttctttgttacacaagtttcttgccaaatttgtttttcaattatcttgtcaaagtcgacatgttgagttcttt |
381 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33735332 |
gaatgagagtgttctatactttgctatttctttgttacacaagtttcttgccaaatttgtttttcaattatcttgtcaaagtcgacatgtggagttcttt |
33735233 |
T |
|
| Q |
382 |
ttaaatgatttatgatatcaaatatttgttgaaatttttcatgcactccaattattttggtagtatgagccattattggttttattgtacgcttttattc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735232 |
ttaaatgatttatgatatcaaatatttgttgaaatttttcatgcactccaattattttggtagtatgagccattattggttttattgtacgcttttattc |
33735133 |
T |
|
| Q |
482 |
tatgataggcttttgaagaagccaaaagtacaatatattaaaattaaaaccctataaaaacataaggagtgtctaacaagtatcgaaataaagaatcaat |
581 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33735132 |
tatgataggtttttgaagaagccaaaagtacaatatattaaaattaaaaccctat-aaaacataaggagtgtctaacaagcatcgaaataaagaatcaat |
33735034 |
T |
|
| Q |
582 |
atatgatagttaaatttgttagtgaaatttaaaatttgatgacctaagcttgagatcattgattttattagagtcaatgttgtgaaggcgtcgaaagaag |
681 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735033 |
atatgatagttaaatttgttagtgagatttaaaatttgatgacctaagcctgagatcattgattttattagagtcaatgttgtgaaggcgtcgaaagaag |
33734934 |
T |
|
| Q |
682 |
ttcaaaataacttagaaattgatcgaaaata |
712 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| |
|
|
| T |
33734933 |
ttc-aaataacttagaaattgctcgaaaata |
33734904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 33735598 - 33735520
Alignment:
| Q |
13 |
gcagagatgatcattccttattctattatggatattatctatgatatcaaaggattaccaagatcatggatattgttca |
91 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735598 |
gcagagatgatcattctttattctattatggatattatctatgatatcaaaggattaccaagatcatggatattgttca |
33735520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 33735476 - 33735447
Alignment:
| Q |
135 |
ctcttcttggctccaacaatcactctcaag |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33735476 |
ctcttcttggctccaacaatcactctcaag |
33735447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 52560719 - 52560652
Alignment:
| Q |
288 |
gagtgttctatactttgatatttctttgttacacaagtttcttgccaaatttgtttttcaattatctt |
355 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||| ||||||| ||||||| |||||| ||| |||| |
|
|
| T |
52560719 |
gagtgttctatgctttgctatttctttgctacacatgtttcttaccaaattcatttttccattctctt |
52560652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University