View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8938_low_32 (Length: 233)

Name: NF8938_low_32
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8938_low_32
NF8938_low_32
[»] scaffold0222 (1 HSPs)
scaffold0222 (21-210)||(18258-18447)
[»] chr2 (4 HSPs)
chr2 (1-210)||(24500742-24500950)
chr2 (46-205)||(25339705-25339864)
chr2 (1-159)||(25361769-25361929)
chr2 (126-169)||(24169881-24169924)
[»] chr4 (7 HSPs)
chr4 (1-210)||(45240453-45240662)
chr4 (21-210)||(10629182-10629371)
chr4 (21-210)||(11498207-11498397)
chr4 (21-210)||(18290464-18290650)
chr4 (19-204)||(14687372-14687558)
chr4 (36-199)||(15349443-15349607)
chr4 (1-160)||(11918341-11918501)
[»] chr7 (15 HSPs)
chr7 (21-210)||(12565432-12565622)
chr7 (19-210)||(13740849-13741039)
chr7 (21-210)||(5395579-5395769)
chr7 (1-206)||(10449697-10449902)
chr7 (21-171)||(4311159-4311309)
chr7 (21-210)||(8783683-8783872)
chr7 (19-210)||(23513498-23513687)
chr7 (36-210)||(16327361-16327535)
chr7 (19-199)||(9581330-9581511)
chr7 (19-199)||(9729182-9729363)
chr7 (66-199)||(540358-540492)
chr7 (57-160)||(4462357-4462460)
chr7 (1-91)||(14223339-14223430)
chr7 (122-198)||(14223256-14223332)
chr7 (126-169)||(14549637-14549680)
[»] chr3 (14 HSPs)
chr3 (21-210)||(13090399-13090588)
chr3 (19-210)||(20559472-20559662)
chr3 (19-210)||(20561780-20561970)
chr3 (19-210)||(20564088-20564278)
chr3 (21-210)||(13096139-13096328)
chr3 (21-205)||(15024135-15024318)
chr3 (41-210)||(9362547-9362716)
chr3 (19-204)||(12778104-12778289)
chr3 (36-199)||(6813313-6813477)
chr3 (126-174)||(10145552-10145600)
chr3 (126-174)||(12188700-12188748)
chr3 (126-174)||(12195114-12195162)
chr3 (126-174)||(13189042-13189090)
chr3 (126-174)||(16375104-16375152)
[»] chr6 (7 HSPs)
chr6 (21-210)||(18852453-18852641)
chr6 (1-210)||(17817928-17818137)
chr6 (21-199)||(19587164-19587341)
chr6 (21-210)||(18189160-18189349)
chr6 (19-210)||(23519345-23519536)
chr6 (36-199)||(22063110-22063274)
chr6 (63-169)||(29685006-29685112)
[»] chr5 (8 HSPs)
chr5 (21-208)||(24218267-24218453)
chr5 (21-210)||(23602230-23602419)
chr5 (1-210)||(20446438-20446647)
chr5 (21-210)||(18487659-18487851)
chr5 (21-210)||(21282502-21282691)
chr5 (39-210)||(24938986-24939157)
chr5 (21-199)||(23712312-23712490)
chr5 (21-83)||(22946858-22946920)
[»] scaffold0566 (1 HSPs)
scaffold0566 (21-210)||(1038-1228)
[»] chr1 (6 HSPs)
chr1 (21-210)||(21786036-21786226)
chr1 (1-210)||(22626621-22626830)
chr1 (36-199)||(27045318-27045482)
chr1 (21-87)||(19877395-19877461)
chr1 (21-82)||(8949170-8949231)
chr1 (21-82)||(20072658-20072719)
[»] scaffold0026 (1 HSPs)
scaffold0026 (21-210)||(16801-16990)
[»] chr8 (7 HSPs)
chr8 (21-210)||(17619173-17619362)
chr8 (19-210)||(20040663-20040853)
chr8 (21-210)||(21855366-21855554)
chr8 (23-145)||(25735450-25735571)
chr8 (36-199)||(20000746-20000907)
chr8 (126-169)||(21267867-21267910)
chr8 (28-82)||(22830336-22830390)
[»] scaffold0012 (2 HSPs)
scaffold0012 (21-207)||(8928-9113)
scaffold0012 (21-207)||(13037-13222)
[»] scaffold0113 (1 HSPs)
scaffold0113 (32-210)||(38232-38410)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-210)||(11904-12115)
[»] scaffold0485 (1 HSPs)
scaffold0485 (1-210)||(11499-11699)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-210)||(52147-52357)
[»] scaffold0090 (1 HSPs)
scaffold0090 (105-199)||(29276-29370)
[»] scaffold0402 (1 HSPs)
scaffold0402 (21-82)||(6313-6374)
[»] scaffold1620 (1 HSPs)
scaffold1620 (126-169)||(619-662)
[»] scaffold0091 (1 HSPs)
scaffold0091 (126-169)||(54782-54825)
[»] scaffold0056 (1 HSPs)
scaffold0056 (126-169)||(41570-41613)
[»] scaffold0290 (1 HSPs)
scaffold0290 (24-86)||(20356-20418)
[»] scaffold0117 (1 HSPs)
scaffold0117 (133-169)||(33183-33219)


Alignment Details
Target: scaffold0222 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 18258 - 18447
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||| |    
T  18258 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcaattgctaaaaagaaactagatgataagg 18357  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||| || ||| |||| ||||||||||||| ||||||| |||||||||||||||||||    
T  18358 gttatataatggtaggtggaatcatcactttcattgttaaaaaatttgaggtaaatgtgaacgaagggataaataggattgagggaaact 18447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24500742 - 24500950
Alignment:
Q  1 atgatgaggact-gtgaagtatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    |||||||||||| ||||  | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  24500742 atgatgaggactagtgagctgtttatgttgtgggctatgctttataaccaccctattaacatttgctattattcgctt-attatcttgtttctattgcta 24500840  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||| || ||||||| |||||| |||| ||||||| ||||||||||||||||||||||    
T  24500841 gaaagaaaccggat-ataacggtgatgtagtgttaggtggaatcatcactttcattgttagaaaatttgaggtaaatatgaacaaagggatcaataggat 24500939  T
Q  200 tgagggaaact 210  Q
    |||||||||||    
T  24500940 tgagggaaact 24500950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 25339864 - 25339705
Alignment:
Q  46 accatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggtaatatagtggtaggtggaatcat 145  Q
    |||| ||||| |||| ||| ||| |||||||||||||||||| ||| ||||||| ||||||||| |||||||||||| ||||  |||||||||| |||||    
T  25339864 accaccctatcaacacttgttatcatttgcttgattatcttgcttcaattgctaaaaagaaaccagatgataaaggtgatatgatggtaggtggtatcat 25339765  T
Q  146 taccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgaggg 205  Q
     |||||||||||||| |||||||| |||| |||||  ||||||||||||||||| |||||    
T  25339764 caccttcattgctaggaagtttggagtaagtgtgagtaaagggatcaataggatagaggg 25339705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 25361769 - 25361929
Alignment:
Q  1 atgatgaggactg-tgaagtatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||| |||  |||||||||| || |  |||||||||||||| | | |||| ||||||||||||||||||||||||||||||||  ||| ||    
T  25361769 atgatgaggactgatgagctatttatgttatgagacatgctttataaccaccatgttaaaatttgctattatttgcttgattatcttgtttcatttgata 25361868  T
Q  100 gaaag-aaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgcta 159  Q
    ||||| |||||||||||||| ||||||||| |||| ||||||||||| || || |||||||    
T  25361869 gaaagaaaaccggatgataagggtaatataatggttggtggaatcatcacttttattgcta 25361929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 24169881 - 24169924
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttgg 169  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||    
T  24169881 atagtagtaggtggtatcattaccttcattgctaggaagtttgg 24169924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 45240662 - 45240453
Alignment:
Q  1 atgatgaggactgtgaag-tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||||  || | ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||| |||||||    
T  45240662 atgatgaggactgttgagctgtttatgttgtgggctatgctttataaccaccatgttaacatttgctattatttgctttattatcttgtttcaattgcta 45240563  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||| || ||||||| || ||| |||| |||||| |||||||||||||| ||||||||    
T  45240562 gaaagaaaccggatgataagggtgatataatggtaggtggaatcatcactttcattgttaaaaaatttgaggtaaaagtgaacaaagggataaataggat 45240463  T
Q  200 tgagggaaact 210  Q
    || ||||||||    
T  45240462 tg-gggaaact 45240453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 10629182 - 10629371
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||| |||||| ||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||    
T  10629182 tttatgttgtaggctatactttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgctagaaagaaaccggat-ataaag 10629280  T
Q  121 gtaatatagtggtaggtggaatcattaccttca-ttgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || |||||||||||||||||||||| || |||| ||| | |||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  10629281 gtgatatagtggtaggtggaatcatcactttcacttgttcgaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaact 10629371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 11498397 - 11498207
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||  |||||||| |    
T  11498397 tttatgtcgtgggctatgctttataaccatcctattaacattttctattatttgcttgattatcttgtttcaattgctaaaaagaaactagatgataagg 11498298  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgct-agaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||| | | ||| |||| ||||||||||||  ||||||| |||||||||||||||||||    
T  11498297 gtgatataatggtaggtggaatcatcactttcattgttaaaaaaatttgaggtaaatgtgaaagaagggataaataggattgagggaaact 11498207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 18290464 - 18290650
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||  ||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||| ||    
T  18290464 tttatgttgtggagtatgctttataaccatcctattaacaa---ctattatttgcttgattatcttgtttcaattactaaaaagaaaccagatgatacag 18290560  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||| || ||| |||| ||||||||||||| ||||||| ||||| |||||||||||||    
T  18290561 gtgatatattggtaggtggaatcatcactttcattgttaaaaaatttgaggtaaatgtgaacgaagggataaatagtattgagggaaact 18290650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 14687558 - 14687372
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaag-aaaccggatgata 117  Q
    |||||||||| || |  |||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  14687558 tatttatgttatgagacatgctttataaccaccatgttaacatttgctattatttgcttgattatcttgtttcaattgatagaaagaaaaccggatgata 14687459  T
Q  118 aaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagg 204  Q
    | ||||||||| |||||||||||||||| || || |||||||  ||||||||||| | ||||||  |||||||||| ||||| ||||    
T  14687458 agggtaatataatggtaggtggaatcatcacttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagaggatagagg 14687372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 15349607 - 15349443
Alignment:
Q  36 atgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaag-aaaccggatgataaaggtaatatagtggta 134  Q
    |||||||||||||| | | |||||||||||||||| |||||||||||||||||||| |||| || |||| |||||||||||||| ||||||||| |||||    
T  15349607 atgctttataaccaccatgttaacatttgctattacttgcttgattatcttgtttcaattgataaaaagaaaaccggatgataagggtaatataatggta 15349508  T
Q  135 ggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    | ||||||||| || || |||||||  ||||||||||| | | ||||  |||||||||| |||||    
T  15349507 gatggaatcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggat 15349443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 11918501 - 11918341
Alignment:
Q  1 atgatgaggactg-tgaagtatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||| |||| | |||||||| ||||| ||||| || ||||  ||| | |||| |||||| ||||||||||||||||||||||   ||||||    
T  11918501 atgatgaggactgatgaactgtttatgttatgggcaatgctctacaaccgccctgtgaacacttgctactatttgcttgattatcttgtttatgttgcta 11918402  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctag 160  Q
      ||||||| |||||||||| || | |||||||||||||| ||||| ||||| ||||||||    
T  11918401 acaagaaactggatgataaaagtgacatagtggtaggtggtatcatcacctttattgctag 11918341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 12565432 - 12565622
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||| |    
T  12565432 tttatgttgtgggctatgctttataaccatcctattaaaatttgctattatttgcttgattatcttgtttcaattgctaaaaagaaactagatgataagg 12565531  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgct-agaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||| | | ||| |||| ||||||||||||| ||||||| |||| ||||||||||||||    
T  12565532 gtgatataatggtaggtggaatcatcactttcattgttaaaaaaatttgaggtaaatgtgaacgaagggataaatacgattgagggaaact 12565622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 13740849 - 13741039
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    |||||||| |||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||    
T  13740849 tatttatgatgtgggctatgctttataaccaccatgttaacatttgctattatttgctttattatcttgtttcaattgctagaaagaaaccgtat-ataa 13740947  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    |||| || |||| |||||||||||||| || ||||||| |||||| |||| ||||||||||||||| ||||| |||| ||||||||||||||    
T  13740948 aggtgatgtagtcgtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaacaacgggataaataagattgagggaaact 13741039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 5395579 - 5395769
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||      
T  5395579 tttatgttgtggactttgctttataaccatcctattaacatatgctattatttgcttgattatcttgtttcaattactaaaaagaaaccagatgataaga 5395678  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgct-agaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||| | | ||| |||| ||||||||||||| || |||| |||||||||||||||||||    
T  5395679 gtgatataatggtaggtggaatcatcactttcattgttaaaaaaatttgaggtaaatgtgaacgaaaggataaataggattgagggaaact 5395769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10449902 - 10449697
Alignment:
Q  1 atgatgaggactgtgaagta-tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||||  |||  |||||||||| |||||||||||||||||| | | |||||||||||||||||||| || ||||||||||||| |||||||    
T  10449902 atgatgaggactgttgagttgtttatgttgtaggctatgctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgcta 10449803  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
     ||||||||| ||  |||||||| |||||||||||||||||||||| || ||||||| ||||||  ||  ||||||||||||||||||||| |||| |||    
T  10449802 aaaagaaaccaga-aataaaggtgatatagtggtaggtggaatcatcactttcattgttagaaaaattaaggtaaatgtgaacaaagggataaatatgat 10449704  T
Q  200 tgaggga 206  Q
    |||||||    
T  10449703 tgaggga 10449697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 4311159 - 4311309
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||||||||||||||||||| | | |||||||||| ||||||||||||||||||||| |||| ||||||| ||| |||||||||||||| |    
T  4311159 tttatgttgtgggctatgctttataaccaccatgttaacatttgttattatttgcttgattatcttatttcaattgctaaaaataaaccggatgataagg 4311258  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttgggg 171  Q
    || |||||||||||||||||||||| ||||| ||| |||| ||||||||||    
T  4311259 gtgatatagtggtaggtggaatcatcacctttatttctaggaagtttgggg 4311309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 8783872 - 8783683
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||| ||||||||||   |||||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |    
T  8783872 tttatcttgtgggctacaatttataaccaccatgttaacatttgctattatttgcttgattatcttgtttcaattgctaaaaagaaatcggatgataagg 8783773  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||| ||||||||| ||||| |||||||| ||||||||||| | ||||||  || |||||||  |||| ||||| ||||    
T  8783772 gtgatataatggtagctggaatcatcacctttattgctaggaagtttggggtgagtgtgaatcaatggatcaaggggatagaggggaact 8783683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 23513498 - 23513687
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    ||||| ||||||||||||||||||||||||| | | |||||||||||||||||||| || |||||| | |||| |||||||  |||||||||||| ||||    
T  23513498 tatttttgttgtgggctatgctttataaccaccatgttaacatttgctattatttgatttattatcctttttcaattgctaagaagaaaccggat-ataa 23513596  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || | | ||||||||| ||| |||||| || ||||||| || |||  | | ||||||||||||||||||||| |||||||||||||||||||    
T  23513597 agatgacatagtggtaagtgtaatcatcactttcattgtta-aaaaatggcggtaaatgtgaacaaagggataaataggattgagggaaact 23513687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 16327535 - 16327361
Alignment:
Q  36 atgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggtaatatagtggtag 135  Q
    |||||||||||||| | | | ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||| | ||| ||| ||    
T  16327535 atgctttataaccaccatgtaaacatttgctattatttgcttgattatcttgtttcaattgataaaaagaaaccggatgataagggtgacataatggcag 16327436  T
Q  136 gtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    |||||||||| || || |||||||  | |||| |||| | ||||||  |||||||||| ||||| |||| |||||    
T  16327435 gtggaatcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagaggaaaact 16327361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 9581330 - 9581511
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattattt-gcttgattatcttgtttcgattgctagaaagaaaccggatgata 117  Q
    |||||||||||| ||  |||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||| |||  || |||||||||||||||||    
T  9581330 tatttatgttgtcggacatgctttataaccaccatgttaacatttgctatttttttgcttgattatcttgtttcaattaataaaaagaaaccggatgata 9581429  T
Q  118 aaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    | ||| ||||| |||||||||||||||| || || |||||||  | |||| |||| | ||||||  |||||||||| |||||    
T  9581430 agggtgatataatggtaggtggaatcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggat 9581511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 9729182 - 9729363
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattattt-gcttgattatcttgtttcgattgctagaaagaaaccggatgata 117  Q
    |||||||||||| ||  |||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||| |||  || |||||||||||||||||    
T  9729182 tatttatgttgtcggacatgctttataaccaccatgttaacatttgctatttttttgcttgattatcttgtttcaattaataaaaagaaaccggatgata 9729281  T
Q  118 aaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    | ||| ||||| |||||||||||||||| || || |||||||  | |||| |||| | ||||||  |||||||||| |||||    
T  9729282 agggtgatataatggtaggtggaatcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggat 9729363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 540492 - 540358
Alignment:
Q  66 tattatttgcttgattatcttgtttcgattgctagaaagaaac-cggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaag 164  Q
    ||||| |||||||||||||||||||| |||| ||||||||||  |||||||||| ||||||||| |||| | ||||||||| || || |||||||  |||    
T  540492 tattacttgcttgattatcttgtttcaattgatagaaagaaaatcggatgataagggtaatataatggtggatggaatcatcacttttattgctaagaag 540393  T
Q  165 tttggggtaaatgtgaacaaagggatcaataggat 199  Q
    |||||||| | ||||||  |||||||||| |||||    
T  540392 tttggggtgagtgtgaatcaagggatcaagaggat 540358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 4462460 - 4462357
Alignment:
Q  57 aacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattg 156  Q
    |||| |||||||||||||||||||||||||||||   ||||||  |||||| ||||||||||| || | |||||||||||||| ||||| ||||| ||||    
T  4462460 aacacttgctattatttgcttgattatcttgtttttgttgctaacaagaaatcggatgataaaagtgacatagtggtaggtggtatcatcacctttattg 4462361  T
Q  157 ctag 160  Q
    ||||    
T  4462360 ctag 4462357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 14223430 - 14223339
Alignment:
Q  1 atgatgaggactg-tgaagtatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttc 91  Q
    ||||||||||||| |||  |||||||||| || |  |||||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  14223430 atgatgaggactgatgagctatttatgttatgagacatgctttataaccaccatgttaacatttgctattatttgcttgattatcttgtttc 14223339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 14223332 - 14223256
Alignment:
Q  122 taatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaatagga 198  Q
    ||||||| |||||||||||||||| || || |||||||  ||||||||||| | ||||||  |||||||||| ||||    
T  14223332 taatataatggtaggtggaatcatcacttttattgctaagaagtttggggtgagtgtgaatcaagggatcaagagga 14223256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 14549637 - 14549680
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttgg 169  Q
    ||||| || ||||| |||||||||||||||||||||||||||||    
T  14549637 atagtagtcggtggtatcattaccttcattgctagaaagtttgg 14549680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 13090588 - 13090399
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||| |||||| ||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||    
T  13090588 tttatgttgtaggctatactttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgctagaaagaaaccggat-ataaag 13090490  T
Q  121 gtaatatagtggtaggtggaatcattaccttca-ttgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || |||||||||||||||||||||| || |||| ||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  13090489 gtgatatagtggtaggtggaatcatcactttcatttgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaact 13090399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 20559472 - 20559662
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    ||||| ||||||||||||||||||||||||| | | ||||||||| |||||||||| || |||||| |||||| |||||||||||||||| |||| ||||    
T  20559472 tatttttgttgtgggctatgctttataaccaccatgttaacatttactattatttgatttattatcctgtttcaattgctagaaagaaactggat-ataa 20559570  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    |||| |||||||||||||||||||||| || ||||||| |||||| |||| |||||||||||| |||||||| |||||||||||||||||||    
T  20559571 aggtgatatagtggtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaataaagggataaataggattgagggaaact 20559662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 20561780 - 20561970
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    ||||| ||||||||||||||||||||||||| | | ||||||||| |||||||||| || |||||| |||||| |||||||||||||||| |||| ||||    
T  20561780 tatttttgttgtgggctatgctttataaccaccatgttaacatttactattatttgatttattatcctgtttcaattgctagaaagaaactggat-ataa 20561878  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    |||| |||||||||||||||||||||| || ||||||| |||||| |||| |||||||||||| |||||||| |||||||||||||||||||    
T  20561879 aggtgatatagtggtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaataaagggataaataggattgagggaaact 20561970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 20564088 - 20564278
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    ||||| ||||||||||||||||||||||||| | | ||||||||| |||||||||| || |||||| |||||| |||||||||||||||| |||| ||||    
T  20564088 tatttttgttgtgggctatgctttataaccaccatgttaacatttactattatttgatttattatcctgtttcaattgctagaaagaaactggat-ataa 20564186  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    |||| |||||||||||||||||||||| || ||||||| |||||| |||| |||||||||||| |||||||| |||||||||||||||||||    
T  20564187 aggtgatatagtggtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaataaagggataaataggattgagggaaact 20564278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 13096139 - 13096328
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||| |||||| ||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||    
T  13096139 tttatgttgtaggctatactttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgctagaaagaaaccggat-ataaag 13096237  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgc-tagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || |||||||||||||||||||||| || |||||| | |||||| |||| ||||||||||||||||||||| |||||||||||||| ||||    
T  13096238 gtgatatagtggtaggtggaatcatcactttcatttcttagaaattttgaggtaaatgtgaacaaagggataaataggattgagggtaact 13096328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 15024135 - 15024318
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||| | ||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||    
T  15024135 tttatgttgtgagttatgctttataaccaccctgttaacatttgctattattcgctt-attatcttgtttcaattgctagaaagaaactggatgataaag 15024233  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgaggg 205  Q
     | ||| |||||||||| ||||||| || || |||||||||||||||||||| | ||||||  |||||||||| ||||| |||||    
T  15024234 atgatacagtggtaggtagaatcatcacttttattgctagaaagtttggggtgagtgtgaatcaagggatcaagaggatagaggg 15024318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 9362716 - 9362547
Alignment:
Q  41 ttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggtaatatagtggtaggtgga 140  Q
    ||||||||| | | |||||||||||||||||||| || ||||||||| ||| |||||||||||||||| |||| |||||||| ||||| ||||||||| |    
T  9362716 ttataaccaccatgttaacatttgctattatttgatttattatcttggttcaattgctagaaagaaactggat-ataaaggtgatataatggtaggtgca 9362618  T
Q  141 atcattaccttcatt-gctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    ||||| || |||||| | |||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  9362617 atcatcactttcatttgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaact 9362547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 12778289 - 12778104
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    |||||||||||| ||  |||||||||| ||| | | ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  12778289 tatttatgttgtcggacatgctttatacccaccatgttaacatttgctattatttgcttgattatcttgtttcaattgataaaaagaaaccggatgataa 12778190  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagg 204  Q
     ||| ||||| |||||||||  |||||  | || |||||||  | |||| |||| | ||||||  |||||||||| ||||| ||||    
T  12778189 gggtgatataatggtaggtgacatcatcccttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggatagagg 12778104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 6813313 - 6813477
Alignment:
Q  36 atgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaag-aaaccggatgataaaggtaatatagtggta 134  Q
    |||||||||||||| | | |||||||||||||||| |||||||||||||||||||| |||| || |||| |||||||||||||| ||||||||| |||||    
T  6813313 atgctttataaccaccatgttaacatttgctattacttgcttgattatcttgtttcaattgataaaaagaaaaccggatgataagggtaatataatggta 6813412  T
Q  135 ggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    | ||||||||| || || |||||||  ||||||| ||| | | ||||  |||||||||| |||||    
T  6813413 gatggaatcatcacttttattgctaagaagtttgaggtgagtatgaatcaagggatcaagaggat 6813477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 10145552 - 10145600
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttggggtaa 174  Q
    ||||| || ||||| |||||||||||||| |||||||||||||| ||||    
T  10145552 atagtagtcggtggtatcattaccttcatcgctagaaagtttggagtaa 10145600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 12188748 - 12188700
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttggggtaa 174  Q
    ||||| || ||||| |||||||||||||| |||||||||||||| ||||    
T  12188748 atagtagtcggtggtatcattaccttcatcgctagaaagtttggagtaa 12188700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 12195162 - 12195114
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttggggtaa 174  Q
    ||||| || ||||| |||||||||||||| |||||||||||||| ||||    
T  12195162 atagtagtcggtggtatcattaccttcatcgctagaaagtttggagtaa 12195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 13189090 - 13189042
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttggggtaa 174  Q
    ||||| || ||||| |||||||||||||| |||||||||||||| ||||    
T  13189090 atagtagtcggtggtatcattaccttcatcgctagaaagtttggagtaa 13189042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 16375152 - 16375104
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttggggtaa 174  Q
    ||||| || ||||| |||||||||||||| |||||||||||||| ||||    
T  16375152 atagtagtcggtggtatcattaccttcatcgctagaaagtttggagtaa 16375104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 18852453 - 18852641
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||| ||||||||||||||| | | |||||||||||||||||||| || ||||||| ||||| ||  ||||||||||||||||| ||||||    
T  18852453 tttatgttgtgggttatgctttataaccaccatgttaacatttgctattatttgatttattatctagtttcaatcactagaaagaaaccggat-ataaag 18852551  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || |||||||||||||||||||||| || ||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  18852552 gtgatatagtggtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaact 18852641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17817928 - 17818137
Alignment:
Q  1 atgatgaggactgtgaagta-tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||||  |||  |||||||||| |||||||||||||||||| | | |||||||||||||||||||| || ||||||||||||| |||||||    
T  17817928 atgatgaggactgttgagttgtttatgttgtaggctatgctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgcta 17818027  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||| || ||||||| ||||||  ||  ||||||||||||||||||||| |||| |||    
T  17818028 gaaagaaactggat-ataaaggtgatatagtggtaggtggaatcatcactttcattgttagaaaaattaaggtaaatgtgaacaaagggataaatatgat 17818126  T
Q  200 tgagggaaact 210  Q
    |||||||||||    
T  17818127 tgagggaaact 17818137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 19587341 - 19587164
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |    
T  19587341 tttatgttgtgggctatgctttataaccaccatgttaaaatttgctattatttgcttgatt-tcttgtttcaattgatagaaagaaaccggatgataagg 19587243  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    || |||||||||||||||||||||| ||||| |||||||| ||||||||||| | | ||||  |||||||||| |||||    
T  19587242 gtgatatagtggtaggtggaatcatcacctttattgctaggaagtttggggtgagtctgaatcaagggatcaagaggat 19587164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 18189349 - 18189160
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||| |||||||||||||||||| | | |||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||| ||||||    
T  18189349 tttatgttgttggctatgctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattggtagaaagaaaccggat-ataaag 18189251  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctaga-aagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||||||||| ||||||| || || ||||||| || | ||  |||  |||||||||||||||||||| |||||||||||||||||||    
T  18189250 gtgatatagtggtaagtggaatgatcactttcattgttaaagaaaattgatgtaaatgtgaacaaagggataaataggattgagggaaact 18189160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 23519536 - 23519345
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    ||||||||||||||||||||||||||||| | |||  | |||||  ||| |||||| |||||||||||||||| ||||||| ||||||| | ||||||||    
T  23519536 tatttatgttgtgggctatgctttataactaccctggtcacattctctactatttgattgattatcttgtttcaattgctaaaaagaaatcagatgataa 23519437  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    | || |||||||||||||||||||||| |||||||||||||| |||||| | || ||| ||| ||| ||| |||||||||||||||| ||||    
T  23519436 aagtgatatagtggtaggtggaatcatcaccttcattgctaggaagtttagagtgaatatgagcaagggggtcaataggattgaggggaact 23519345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 22063274 - 22063110
Alignment:
Q  36 atgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaag-aaaccggatgataaaggtaatatagtggta 134  Q
    |||||||||||||| | | |||||||||||||||| |||||||||||||||||||| |||| || |||| |||||||||||||| ||||||||| |||||    
T  22063274 atgctttataaccaccatgttaacatttgctattacttgcttgattatcttgtttcaattgataaaaagaaaaccggatgataagggtaatataatggta 22063175  T
Q  135 ggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    | ||||||||| || || |||||||  ||||||||||| | | ||||  |||||||||| |||||    
T  22063174 gatggaatcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggat 22063110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 29685006 - 29685112
Alignment:
Q  63 tgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaa 162  Q
    ||||| |||||||||||||||||||||||  |||||| ||||||| ||||||| ||| || | |||||||| ||||||||||| || || |||||||  |    
T  29685006 tgctactatttgcttgattatcttgtttctgttgctaaaaagaaatcggatgagaaaagtgagatagtggtgggtggaatcatcacttttattgctaaga 29685105  T
Q  163 agtttgg 169  Q
    |||||||    
T  29685106 agtttgg 29685112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 24218267 - 24218453
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||| ||||||||||||||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||   |||||||||||||||| ||||||    
T  24218267 tttatattgtgggctatgctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaatcattagaaagaaaccggat-ataaag 24218365  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaa 208  Q
    || |||||||||||||||||||||| || ||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  24218366 gtgatatagtggtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaa 24218453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 23602419 - 23602230
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||  ||||| ||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||    
T  23602419 tttatgttgtacgctatactttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgctagaaagaaaccggat-ataaag 23602321  T
Q  121 gtaatatagtggtaggtggaatcattaccttca-ttgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || |||||||||||||||||||||| || |||| ||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  23602320 gtgatatagtggtaggtggaatcatcactttcatttgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaact 23602230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20446647 - 20446438
Alignment:
Q  1 atgatgaggactgtgaag-tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||||  || | |||||||||| |||||||||||||||||| | | |||||||||||||||||||| || ||||||||||||| |||||||    
T  20446647 atgatgaggactgttgagctgtttatgttgtaggctatgctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgcta 20446548  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| || ||||||| ||| ||  ||  ||||||||||||||||| ||| |||| |||    
T  20446547 gaaagaaaccggat-ataaaggtgatatagtggtaggtggaatcatcactttcattgttaggaaaattaaggtaaatgtgaacaaagagataaatatgat 20446449  T
Q  200 tgagggaaact 210  Q
    |||||||||||    
T  20446448 tgagggaaact 20446438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 18487851 - 18487659
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||| |    
T  18487851 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcaattgctaaaaagaaactagatgataagg 18487752  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctaga---aagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||| ||||||||| || ||||||| || |      |||| ||||||||||||| ||||||| |||||||||||| ||||||    
T  18487751 gtgatataatggtagatggaatcatcactttcattgttaaatttttttttgaggtaaatgtgaacgaagggataaataggattgagagaaact 18487659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 21282691 - 21282502
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||||||||||||||||||  | | |||||||||||||||||||| || ||||||||||||| |||| |||||||||||| ||| ||||||    
T  21282691 tttatgttgtgggctatgctttataacccccatgttaacatttgctattatttgatttattatcttgtttcaattggtagaaagaaaccagat-ataaag 21282593  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctaga-aagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||||||||| |||||||||| |  ||||||| || | ||  ||| ||||||||||||||||||||| ||| |||||||||||||||    
T  21282592 gtgatatagtggtaagtggaatcatcattttcattgttaaagaaaattgaggtaaatgtgaacaaagggataaattggattgagggaaact 21282502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 24938986 - 24939157
Alignment:
Q  39 ctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggtaatatagtggtaggtg 138  Q
    ||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||||||||||| || |||||| |||||| | |||||||||||||||    
T  24938986 ctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgctagaaaaaacccggat-ataaagatgatatagtggtaggtg 24939084  T
Q  139 gaatcattaccttca-ttgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    ||||||| || |||| ||| || ||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  24939085 gaatcatcactttcatttgttataaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaact 24939157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 23712490 - 23712312
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||| ||  |||||||||||||| | | ||||||||||||||| ||||||||||||||||||||| |||  || |||||||||||||||||| |    
T  23712490 tttatgttgtcggacatgctttataaccaccatgttaacatttgctattttttgcttgattatcttgtttcaattaataaaaagaaaccggatgataagg 23712391  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    || ||||| |||||||||||||||| || ||  ||||||  | |||| |||| | ||||||  |||||||||| |||||    
T  23712390 gtgatataatggtaggtggaatcatcacttttgttgctaagaggtttagggtgagtgtgaatcaagggatcaagaggat 23712312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 22946858 - 22946920
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattat 83  Q
    ||||| ||||||||||||||| ||||||| ||| | |||| ||||||||| ||||||||||||    
T  22946858 tttatattgtgggctatgcttaataaccaccctgtgaacacttgctattacttgcttgattat 22946920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 1038 - 1228
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||  |||||||| |    
T  1038 tttatgttatgggctatgctttataaccatcctattaacattttctattatttgcttgattatcttgtttcaattgctaaaaagaaactagatgataagg 1137  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgct-agaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||| | | ||| |||| ||||||||||||  ||||||| |||||||||||||||||||    
T  1138 gtgatataatggtaggtggaatcatcactttcattgttaaaaaaatttgaggtaaatgtgaaagaagggataaataggattgagggaaact 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 21786226 - 21786036
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||| |    
T  21786226 tttatgttgtgggctatgctttataaccatcttattaacatttgctattatttgcttgattatcttgtttcaattgctaaaaagaaactagatgataagg 21786127  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgct-agaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||  | | ||| |||| ||||||||||||| || |||| |||||||||||||||||||    
T  21786126 gtgatataatggtaggtggaatcatcactttcattattaaaaaaatttgaggtaaatgtgaacgaatggataaataggattgagggaaact 21786036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 22626830 - 22626621
Alignment:
Q  1 atgatgaggactgtgaag-tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttg-attatcttgtttcgattgct 98  Q
    ||||||||||||||  || | |||||||| |||| ||||||||||||||| | |  ||| ||||||||||||||||||  ||||||||||||| ||||||    
T  22626830 atgatgaggactgttgagctgtttatgtt-tgggatatgctttataaccaccatggtaaaatttgctattatttgcttttattatcttgtttcaattgct 22626732  T
Q  99 agaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaatagga 198  Q
    | ||||||||||||| || ||||| || ||||||||||||||||||| || ||||||| ||| || |||| ||||||| ||||||||||||| |||||||    
T  22626731 ataaagaaaccggat-atgaaggtgatgtagtggtaggtggaatcatcactttcattgttaggaaatttgaggtaaatatgaacaaagggataaatagga 22626633  T
Q  199 ttgagggaaact 210  Q
    ||||||||||||    
T  22626632 ttgagggaaact 22626621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 27045318 - 27045482
Alignment:
Q  36 atgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaag-aaaccggatgataaaggtaatatagtggta 134  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||| || |||| ||||| |||||||| ||||||||| |||||    
T  27045318 atgctttataaccatcatgttaacatttgctattacttgcttgattatcttgtttcaattgataaaaagaaaaccagatgataagggtaatataatggta 27045417  T
Q  135 ggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    | ||||||||| || || |||||||  ||||||||||| | | ||||  |||||||||| |||||    
T  27045418 gatggaatcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggat 27045482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 19877461 - 19877395
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttg 87  Q
    ||||||||||||||||||||| ||||||||||| | |||| ||||| ||| ||||||||||||||||    
T  19877461 tttatgttgtgggctatgcttcataaccatcctgtgaacacttgcttttacttgcttgattatcttg 19877395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 8949231 - 8949170
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgatta 82  Q
    ||||||||||||||||||||| | ||||| ||  |||||| ||||| ||| |||||||||||    
T  8949231 tttatgttgtgggctatgcttaacaaccaccccgttaacacttgcttttacttgcttgatta 8949170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 20072719 - 20072658
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgatta 82  Q
    ||||||||||||||||||||| | ||||||||  | || | ||||| |||||||||||||||    
T  20072719 tttatgttgtgggctatgcttaacaaccatcccgtaaatacttgcttttatttgcttgatta 20072658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 16801 - 16990
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||| ||||||    
T  16801 tttatgttgtgggctatgctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattggtagaaagaaaccggat-ataaag 16899  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctaga-aagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||||||||| |||||||||| || ||||||| || | ||  ||| ||||||||||||||||||||| |||||||||||||||||||    
T  16900 gtgatatagtggtaagtggaatcatcactttcattgttaaagaaaattgaggtaaatgtgaacaaagggataaataggattgagggaaact 16990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 17619173 - 17619362
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||| |||||| ||||||||||| | | |||||||||||||||||||| || ||||||||||||| | ||||||||||||||||||| ||||||    
T  17619173 tttatgttgtaggctatactttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaaatgctagaaagaaaccggat-ataaag 17619271  T
Q  121 gtaatatagtggtaggtggaatcattaccttca-ttgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || |||||||||||||||||||||| || |||| ||| |||||| |||| |||||||||||||||| |||| |||||||||||||||||||    
T  17619272 gtgatatagtggtaggtggaatcatcactttcatttgttagaaaatttgaggtaaatgtgaacaaaaggataaataggattgagggaaact 17619362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 20040853 - 20040663
Alignment:
Q  19 tatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataa 118  Q
    ||||| ||||||||||||||||||||||||| | | |||||||||||||||||||  || ||| || |||||| |||||||||||||||| |||| ||||    
T  20040853 tatttttgttgtgggctatgctttataaccaccatgttaacatttgctattattttatttattttcctgtttcaattgctagaaagaaactggat-ataa 20040755  T
Q  119 aggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    |||| ||||||||||||||||||||||  | ||||||| |||||| |||| |||||||||||| |||||||| |||||||||||||||||||    
T  20040754 aggtgatatagtggtaggtggaatcatccctttcattgttagaaaatttgaggtaaatgtgaataaagggataaataggattgagggaaact 20040663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 21855554 - 21855366
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||||||| |||||||||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||| ||||||    
T  21855554 tttatgttgtaggctatgctttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgctaaaaagaaaccggat-ataaag 21855456  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    || ||||| |||||||||||||||| || ||||||| ||||||  ||  ||| ||||||||||||||||| |||| ||||||||||||||    
T  21855455 gtgatataatggtaggtggaatcatcactttcattgttagaaaaattaaggttaatgtgaacaaagggataaatatgattgagggaaact 21855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 25735450 - 25735571
Alignment:
Q  23 tatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggt 122  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  25735450 tatgttgtgggttatgctttataaccaccctgttaacatttgctattattcgctt-attatcttgtttcaattgctcgaaagaaaccggatgataaaggt 25735548  T
Q  123 aatatagtggtaggtggaatcat 145  Q
     ||||||||||||| ||||||||    
T  25735549 gatatagtggtagggggaatcat 25735571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 20000746 - 20000907
Alignment:
Q  36 atgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaag-aaaccggatgataaaggtaatatagtggta 134  Q
    |||||||||||||| |   |||||||||||||||| |||||||||||||||||||  |||| ||||||| |||||||||||||| ||||||||| |||||    
T  20000746 atgctttataaccaccacgttaacatttgctattacttgcttgattatcttgttttaattgatagaaagaaaaccggatgataagggtaatataatggta 20000845  T
Q  135 ggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    | ||||||||| || || ||||||   ||||||||||| | ||||||  |||||||||| |||||    
T  20000846 gatggaatcatcacttttattgct---aagtttggggtgagtgtgaatcaagggatcaagaggat 20000907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 21267867 - 21267910
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttgg 169  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||    
T  21267867 atagtgataggtggtatcattaccttcattgctaggaagtttgg 21267910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 22830336 - 22830390
Alignment:
Q  28 tgtgggctatgctttataaccatcctattaacatttgctattatttgcttgatta 82  Q
    |||||||||||||| ||||||| ||| |||||| ||||| ||| |||||||||||    
T  22830336 tgtgggctatgcttaataaccaccctgttaacacttgcttttacttgcttgatta 22830390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 9113 - 8928
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||| ||| ||||||||||||||| || | | |||||||| ||||||||||| || ||||||||||||| || |||||||||||| ||||| ||||||    
T  9113 tttatgatgtaggctatgctttataaacaccatgttaacattcgctattatttgatttattatcttgtttcaatcgctagaaagaaatcggat-ataaag 9015  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaa 207  Q
    || |||||||||||||||||||||| || ||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  9014 gtgatatagtggtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaa 8928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 13222 - 13037
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaag 120  Q
    |||||| ||| ||||||||||||||| || | | |||||||| ||||||||||| || ||||||||||||| || |||||||||||| ||||| ||||||    
T  13222 tttatgatgtaggctatgctttataaacaccatgttaacattcgctattatttgatttattatcttgtttcaatcgctagaaagaaatcggat-ataaag 13124  T
Q  121 gtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaa 207  Q
    || |||||||||||||||||||||| || ||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  13123 gtgatatagtggtaggtggaatcatcactttcattgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaa 13037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 210
Target Start/End: Complemental strand, 38410 - 38232
Alignment:
Q  32 ggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgctagaaagaaaccggatgataaaggtaatatagtg 131  Q
    |||||| ||||||||||| | | |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |||||| | ||||||||    
T  38410 ggctatactttataaccaccatgttaacatttgctattatttgatttattatcttgtttcaattgctagaaagaaaccggat-ataaagatgatatagtg 38312  T
Q  132 gtaggtggaatcattaccttca-ttgctagaaagtttggggtaaatgtgaacaaagggatcaataggattgagggaaact 210  Q
    |||||||||||||| || || | ||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  38311 gtaggtggaatcatcacttttatttgttagaaaatttgaggtaaatgtgaacaaagggataaataggattgagggaaact 38232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 12115 - 11904
Alignment:
Q  1 atgatgaggactgtgaag-tatttatgttgtgggctatgctttat-aaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgct 98  Q
    |||||||||||||| ||| | |||||||||| |||||| |||| | ||||| | |  ||||||||||||||||||| || ||||||||||||| ||||||    
T  12115 atgatgaggactgttaagctgtttatgttgtaggctatacttttttaaccaccatggtaacatttgctattatttgatttattatcttgtttcaattgct 12016  T
Q  99 agaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctaga-aagtttggggtaaatgtgaacaaagggatcaatagg 197  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||| || ||||||| || | ||  ||| |||||||||||||||||||||  |||||    
T  12015 agaaagaaaccggat-ataaaggtgatatagtggtaagtggaatcatcactttcattgttaaagaaaattgaggtaaatgtgaacaaagggatagatagg 11917  T
Q  198 attgagggaaact 210  Q
    |||||||||||||    
T  11916 attgagggaaact 11904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11699 - 11499
Alignment:
Q  1 atgatgaggactg-tgaagtatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||| |||| | || |||||||||||||||||||||||||| ||| ||||||||||||          ||||||||||||||| |||||||    
T  11699 atgatgaggactgatgaactgttaatgttgtgggctatgctttataaccaccctgttaacatttgct----------tgattatcttgtttcaattgcta 11610  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
     ||||||||||||||||||  || || || |||||||||||||||| ||||| |||||||||||||||||||| | ||||||  |||||||||| |||||    
T  11609 aaaagaaaccggatgataagagtgatgtaatggtaggtggaatcatcacctttattgctagaaagtttggggtgagtgtgaatcaagggatcaagaggat 11510  T
Q  200 tgagggaaact 210  Q
     ||||| ||||    
T  11509 agaggggaact 11499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 52357 - 52147
Alignment:
Q  1 atgatgaggactg-tgaagtatttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatcttgtttcgattgcta 99  Q
    ||||||||||||| |||  |||||||||| || |  |||||||||||||| | | ||||||||||||||||||||||||||| ||||||||| |||| ||    
T  52357 atgatgaggactgatgagctatttatgttatgagacatgctttataaccaccatgttaacatttgctattatttgcttgattttcttgtttcaattgata 52258  T
Q  100 gaaagaaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
     ||||||||| ||| |||| ||| ||||| |||||||||||||||| || || |||||||  | |||| |||| | ||||||  |||||||||| |||||    
T  52257 aaaagaaaccagattataagggtgatataatggtaggtggaatcatcacttttattgctaagaggtttagggtgagtgtgaatcaagggatcaagaggat 52158  T
Q  200 tgagggaaact 210  Q
     |||| |||||    
T  52157 agaggaaaact 52147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 29276 - 29370
Alignment:
Q  105 aaaccggatgataaaggtaatatagtggtaggtggaatcattaccttcattgctagaaagtttggggtaaatgtgaacaaagggatcaataggat 199  Q
    |||||||||||||| ||||||||| |||||| ||||||||| || || |||||||  ||||||||||| | | ||||  |||||||||| |||||    
T  29276 aaaccggatgataagggtaatataatggtagatggaatcatcacttttattgctaagaagtttggggtgagtatgaatcaagggatcaagaggat 29370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 6313 - 6374
Alignment:
Q  21 tttatgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgatta 82  Q
    |||||||| |||||||||||| ||||||| ||  |||||||||||| ||| |||||||||||    
T  6313 tttatgttatgggctatgcttaataaccaccccgttaacatttgcttttacttgcttgatta 6374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1620 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1620
Description:

Target: scaffold1620; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 662 - 619
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttgg 169  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||    
T  662 atagtagtaggtggtatcattaccttcattgctaggaagtttgg 619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 54782 - 54825
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttgg 169  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||    
T  54782 atagtagtaggtggtatcattaccttcattgctaggaagtttgg 54825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 41570 - 41613
Alignment:
Q  126 atagtggtaggtggaatcattaccttcattgctagaaagtttgg 169  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||    
T  41570 atagtagtaggtggtatcattaccttcattgctaggaagtttgg 41613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 20418 - 20356
Alignment:
Q  24 atgttgtgggctatgctttataaccatcctattaacatttgctattatttgcttgattatctt 86  Q
    |||||||||||||||||| | ||||| ||  |||||| ||||| ||| |||||||||||||||    
T  20418 atgttgtgggctatgcttaacaaccaccccgttaacacttgcttttacttgcttgattatctt 20356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 33219 - 33183
Alignment:
Q  133 taggtggaatcattaccttcattgctagaaagtttgg 169  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  33219 taggtggtatcattaccttcattgctaggaagtttgg 33183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University