View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8938_low_5 (Length: 771)
Name: NF8938_low_5
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_low_5 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0068 (2 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0530 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 698; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 17 - 754
Target Start/End: Original strand, 32095042 - 32095779
Alignment:
| Q |
17 |
tgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095042 |
tgttcttgtcaatggtaatgttacgggacccatcattttaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
32095141 |
T |
|
| Q |
117 |
gggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32095142 |
gggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgctccaatcattttgcatcttctcttcgcat |
32095241 |
T |
|
| Q |
217 |
atgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32095242 |
atgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtcaatct |
32095341 |
T |
|
| Q |
317 |
ccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaa |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095342 |
ccaaaagtcggaatttttttgtagcaggaatgtttcaagggctgatcataataatatagcgaatattcttggtgttcatgctgttttgggtacaggtaaa |
32095441 |
T |
|
| Q |
417 |
tatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095442 |
tatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaag |
32095541 |
T |
|
| Q |
517 |
tctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgat |
616 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32095542 |
tctttcaaaagcaggaagagaagtgttaattaagtttgtccttcagtctataccaacctatttcatgagtttattcactcttccctcgtctctgtgtgat |
32095641 |
T |
|
| Q |
617 |
gaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaa |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32095642 |
gaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatgtcttgggataaattatcaatgcataaaa |
32095741 |
T |
|
| Q |
717 |
acgatggaggtatgagcttcaaaagtcttggtactttt |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095742 |
acgatggaggtatgagcttcaaaagtcttggtactttt |
32095779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 641 - 742
Target Start/End: Original strand, 24176243 - 24176344
Alignment:
| Q |
641 |
ttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaa |
740 |
Q |
| |
|
|||||||||||||| || || ||| ||||| |||||||| ||||| ||||||||||||||||| ||||| || || |||||||| |||||||| |||| |
|
|
| T |
24176243 |
ttttggtggggtcactcaggatcacataggaaaggtatacactggatgtcttgggataaattatctatgcacaagaaagatggagggatgagctttaaaa |
24176342 |
T |
|
| Q |
741 |
gt |
742 |
Q |
| |
|
|| |
|
|
| T |
24176343 |
gt |
24176344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 498
Target Start/End: Original strand, 21697081 - 21697180
Alignment:
| Q |
399 |
gttttgggtacaggtaaatatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagatta |
498 |
Q |
| |
|
||||| ||||| ||||| ||| | || ||||| || ||| |||||||||||||||| |||||||| | ||||||||||||||| ||||| | ||||||| |
|
|
| T |
21697081 |
gttttaggtactggtaagtatctgggtctcccttcaatggtaggccgaagtaagaaggcaaccttcagcttcatcaaggatagagtttggcagaagatta |
21697180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 15948724 - 15948770
Alignment:
| Q |
72 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
15948724 |
caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg |
15948770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 35222348 - 35222242
Alignment:
| Q |
51 |
attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagcta |
150 |
Q |
| |
|
||||||||| |||| | || ||||| || ||| |||| ||||| || |||||||||||||||||||| | ||| | || |||||||| |||||||||| |
|
|
| T |
35222348 |
attccaggtcgaggactaagacaaggagatcctttgtcgccatacttattcattatttgtgcagaaggactttcctctttaattcggaaggcagaagcta |
35222249 |
T |
|
| Q |
151 |
gaggtga |
157 |
Q |
| |
|
| ||||| |
|
|
| T |
35222248 |
gtggtga |
35222242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 655
Target Start/End: Original strand, 21697297 - 21697338
Alignment:
| Q |
614 |
gatgaaattgaaaaaatgattaactccttttggtggggtcat |
655 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
21697297 |
gatgaaattgaaaaaatgatgaataccttttggtggggtcat |
21697338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 754
Target Start/End: Original strand, 48211408 - 48212146
Alignment:
| Q |
17 |
tgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| || | ||||| || ||||| ||||| ||||||||| |
|
|
| T |
48211408 |
tgttcttgtcaatggtaatgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattatcaccgtacttgtttattatctgtgcagaa |
48211507 |
T |
|
| Q |
117 |
gggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcat |
216 |
Q |
| |
|
||| |||| ||| | ||||||||||||||||| ||||| || || ||||| | ||| |||| || |||| ||| || || | || || || || ||| |
|
|
| T |
48211508 |
gggctatcagcactcattcggaaagcagaagcaagaggggatattaatggtgtgaaagtctgtaataatgctcccataatatcacacctcctttttgcag |
48211607 |
T |
|
| Q |
217 |
atgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatct |
316 |
Q |
| |
|
|||||||||| | ||||| ||||||| || || |||||| |||||||||| |||| | || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
48211608 |
atgattgcttcctgttttttcgtgctaatttgaacaaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagctgttaatct |
48211707 |
T |
|
| Q |
317 |
ccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaa |
416 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||| || || ||||| ||| | |||| ||||||||||||||| |
|
|
| T |
48211708 |
ccaaaagtcagaatttttttgtagcaggaatgtttcaccagctgatcataaaaatatagctaacatccttggagttaaaactgtcttgggtacaggtaaa |
48211807 |
T |
|
| Q |
417 |
tatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaa- |
515 |
Q |
| |
|
|| |||| | ||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| || || |||| |||||||||||| |
|
|
| T |
48211808 |
tacctaggattaccctcgatgattggccgaagtaagaaagctacatttaacttcatcaaggatagagtttggaagaaaatcaattcgtggagcagtaaat |
48211907 |
T |
|
| Q |
516 |
gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtga |
615 |
Q |
| |
|
| || || || || ||||||||||| || || || | ||| ||||| || || ||||| ||||| ||||| ||||| ||||| || | || ||||||| |
|
|
| T |
48211908 |
gcctctctaaggctggaagagaagtattgataaaatttgttcttcaatcaattccaacgtattttatgagcttatttactctacctttgtcgttgtgtga |
48212007 |
T |
|
| Q |
616 |
tgaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaa |
715 |
Q |
| |
|
||| ||||| || ||||| ||||| |||||||||||||| || || |||| | || || ||||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
48212008 |
tgagattgagaagatgatgaactctttttggtggggtcactcaggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgcataaa |
48212107 |
T |
|
| Q |
716 |
aacgatggaggtatgagcttcaaaagtcttggtactttt |
754 |
Q |
| |
|
|| |||||||||||| ||| |||| |||||| |||||| |
|
|
| T |
48212108 |
aaagatggaggtatgtcctttaaaaatcttggaactttt |
48212146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 19 - 747
Target Start/End: Complemental strand, 46390046 - 46389317
Alignment:
| Q |
19 |
ttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
118 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| || | ||||| | ||||| ||||| ||||||||||| |
|
|
| T |
46390046 |
ttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattatcaccgcacttgtttattatatgtgcagaagg |
46389947 |
T |
|
| Q |
119 |
gttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatat |
218 |
Q |
| |
|
| |||| || | |||| |||||||||||| ||||| || || ||||| | || |||| || |||| ||| || || | || || || || ||| || |
|
|
| T |
46389946 |
gctatcaacactaattcagaaagcagaagcaagaggggatattaatggtgtgaaggtctgtaataatgctcccataatatcacacctcctttttgcagat |
46389847 |
T |
|
| Q |
219 |
gattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctcc |
318 |
Q |
| |
|
|| |||| || ||||| |||||| ||| || ||||||| |||||||||| |||||| || ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46389846 |
gaccgcttcttgtttttttgtgctaattcgaaccaagcacaaaaaatgagaaatattttgtcagtttatgagaaagcgtcaggtcaagctgttaatctcc |
46389747 |
T |
|
| Q |
319 |
aaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaata |
418 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||||||||||||||||| || || ||||| ||| | ||||| ||||||||||||||||| |
|
|
| T |
46389746 |
aaaagtcataaattttttgtagcaggaatgtttcatcggttgatcataataatatagctaacatccttggagttaaagctgtcttgggtacaggtaaata |
46389647 |
T |
|
| Q |
419 |
tttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaa-gt |
517 |
Q |
| |
|
|||| | |||| ||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| || || |||| ||||| |||||| | |
|
|
| T |
46389646 |
cctaggattacccttgatgattggccgaagtaagaaagctacatttaacttcatcaaggatagagtttggaagaaaatcaatttgtggagtagtaaatgc |
46389547 |
T |
|
| Q |
518 |
ctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatg |
617 |
Q |
| |
|
|| || || || ||||||||||| || || || ||||| || || || || ||||| ||||| ||||| ||||| ||||| || || || ||||||||| |
|
|
| T |
46389546 |
ctctctaaggctggaagagaagtattgataaaatctgttctacaatcaattccaacgtattttatgagcttatttactctaccttcgtcgttgtgtgatg |
46389447 |
T |
|
| Q |
618 |
aaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaa |
717 |
Q |
| |
|
| ||||| || ||||| ||||| |||||||||||||| | || |||| | || || ||||||||||| |||||||| |||||||| || | |||||| |
|
|
| T |
46389446 |
agattgagaagatgatgaactctttttggtggggtcacttaggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctattcttaaaaa |
46389347 |
T |
|
| Q |
718 |
cgatggaggtatgagcttcaaaagtcttgg |
747 |
Q |
| |
|
||||||||||||||||| |||| |||||| |
|
|
| T |
46389346 |
agatggaggtatgagctttaaaaatcttgg |
46389317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 291 - 657
Target Start/End: Complemental strand, 53710066 - 53709699
Alignment:
| Q |
291 |
aaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtg |
390 |
Q |
| |
|
||||| ||||||| ||||||||| || ||||| || ||||| ||||| |||| |||||||| | || |||||||||| ||||| ||||||||||| | |
|
|
| T |
53710066 |
aaagcatcaggtcgagcggttaacctacaaaaatcagaaatcttttgccgcagaaatgtttcgaccgcggatcataatagtatagctaatattcttggag |
53709967 |
T |
|
| Q |
391 |
ttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaa |
490 |
Q |
| |
|
|||| ||||| ||||| | ||||| ||| | || || || || |||||||| |||| ||||||||||| ||||||||||| |||||||| | ||||| |
|
|
| T |
53709966 |
ttcaagctgtattgggcattggtaagtatcttggtctgccatctatgataggaagaagcaagaaagcaacttttaatttcattaaggatagggtgtggaa |
53709867 |
T |
|
| Q |
491 |
aaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagttta |
589 |
Q |
| |
|
|||||||| | |||||||||||| | || || |||||||| ||||||| |||||||| ||||||||||||||||| || || || || |||||| || |
|
|
| T |
53709866 |
gaagattaactcatggagcagtaaatgcctctccaaagcaggtcgagaagttttaattaaatctgtccttcagtctattcccacatactttatgagtcta |
53709767 |
T |
|
| Q |
590 |
ttcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattc |
657 |
Q |
| |
|
|||||| | || |||||||| |||||||| ||||| || ||||| || || || |||||||||||||| |
|
|
| T |
53709766 |
ttcactttaccgtcatctctttgtgatgagattgacaagatgatgaattcattctggtggggtcattc |
53709699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 539 - 742
Target Start/End: Original strand, 45420028 - 45420231
Alignment:
| Q |
539 |
gtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaact |
638 |
Q |
| |
|
||||||||||| |||||| | || ||||| ||||| ||||| ||||| || ||||| || || || ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
45420028 |
gtgttaattaaatctgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaact |
45420127 |
T |
|
| Q |
639 |
ccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaa |
738 |
Q |
| |
|
| || |||||||||||||| || ||| || | || || || ||| | | | ||||||| | || ||||||||||| ||||||||||||||||| || |
|
|
| T |
45420128 |
ctttctggtggggtcattcaggatcacataaaaaaggaattcactggttgccataggataaactgtctatgcataaaaaggatggaggtatgagctttaa |
45420227 |
T |
|
| Q |
739 |
aagt |
742 |
Q |
| |
|
|||| |
|
|
| T |
45420228 |
aagt |
45420231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 477 - 740
Target Start/End: Complemental strand, 48027792 - 48027529
Alignment:
| Q |
477 |
gatagaatttggaaaaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacct |
575 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||| |||||| ||||||| ||||| || | ||||| | || || | ||| ||||| ||||| || |||| |
|
|
| T |
48027792 |
gatagaatttggaagaagataaatttatggagtagtaaaagtctttcaaaagccggtcgtgaagttctcatcaaatttgtgcttcaatctatccctacct |
48027693 |
T |
|
| Q |
576 |
atttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattcgg--gctcaagtaggagc |
673 |
Q |
| |
|
| || |||||||| ||||||| ||| ||||| |||||||||||||||| ||| || || |||||||||||||| ||||||| | |||| || || |
|
|
| T |
48027692 |
actttatgagtttgttcactcatcctgtctctctttgtgatgaaattgaaagaattatgaattccttttggtggggccattcgggaggtcaa--agtaga |
48027595 |
T |
|
| Q |
674 |
ggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaa |
740 |
Q |
| |
|
||| || | ||| |||||||||||||||| || ||||| || || |||||||||||||| ||||||| |
|
|
| T |
48027594 |
ggttta-actggctttcttgggataaattgtctatgcacaagaatgatggaggtatgagtttcaaaa |
48027529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 654
Target Start/End: Complemental strand, 17779581 - 17779403
Alignment:
| Q |
477 |
gatagaatttggaaaaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacct |
575 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| | || || || | || |||| || |||||||| | || ||||| || || ||||||| |
|
|
| T |
17779581 |
gatagaatttggaaaaagattaattcctggagtagtaagtgcctctctaaggttggccgagaggttttaattaaattggtgcttcaatccattccaacct |
17779482 |
T |
|
| Q |
576 |
atttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtca |
654 |
Q |
| |
|
| ||||||||| | || ||||| || || ||| ||||||||||||||||||||||| | || || |||||||||||||| |
|
|
| T |
17779481 |
acttcatgagtctgtttactctaccatcgtctttgtgtgatgaaattgaaaaaatgttaaattctttttggtggggtca |
17779403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 746
Target Start/End: Complemental strand, 23266515 - 23265786
Alignment:
| Q |
17 |
tgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||| || || || ||||| | ||||| || |||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
23266515 |
tgttcttgtcaatggtaatgttactggtcctattattcctgc-agaggcttacggcaaggtgaccctttgtcaccgtatttgtttattatttgtgcagaa |
23266417 |
T |
|
| Q |
117 |
gggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcat |
216 |
Q |
| |
|
|||||||| || | ||||| |||||||||||||||||||| || ||||| | |||||||||||||||| || ||||||| ||||| ||||| ||| |
|
|
| T |
23266416 |
gggttatctgctcttattcgaaaagcagaagctagaggtgatattaatggggttaaaatctgcaacaatgcgcctatcatttcacatctcctctttgcag |
23266317 |
T |
|
| Q |
217 |
atgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatct |
316 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||| | |||| |||||||||| ||||||||| |||||| |||| || ||||||||||| | || || |
|
|
| T |
23266316 |
atgactgcttcttattttttcgtgcaactcagaggcaagatttgaaaatgagggatattttatctatttataagaaggcatcaggtcaagctatcaacct |
23266217 |
T |
|
| Q |
317 |
ccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaa |
416 |
Q |
| |
|
|||||||| ||||| ||||| ||| |||||||| ||| |||||||||||||| || | |||| |||||||| | ||||||||||| | ||||||| |
|
|
| T |
23266216 |
tcaaaagtctgaaatattttgcagccggaatgttccaactgctgatcataataacattgctcatatacttggtgtaaaggctgttttgggcataggtaaa |
23266117 |
T |
|
| Q |
417 |
tatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaa- |
515 |
Q |
| |
|
||||||||||| || |||||||| || || || ||||||||||| || || || ||||| || | ||||||| || || |||| |||||| ||||| |
|
|
| T |
23266116 |
tatttaggccttccttccatgatcggtcggagcaagaaagcaactttcaactttatcaaagaccgtgtttggaagaaaataaattcttggagttgtaaat |
23266017 |
T |
|
| Q |
516 |
gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtga |
615 |
Q |
| |
|
|| |||| || ||||| |||||||| || ||||| ||||| || || ||||| ||||| | ||| ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
23266016 |
gtatttctaaggcagggagagaagttttgattaaatctgtactgcaatctattccaacttcttttttgagtttattcactctttcgtcatctttgtgtga |
23265917 |
T |
|
| Q |
616 |
tgaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaa |
715 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||||||||| || |||| | | | || ||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
23265916 |
tgaaattgaaaagatgatgaattctttttggtggggtcattctggttcaaacaagcgaggaatacactggatgtcttgggataaattagtaatgcataaa |
23265817 |
T |
|
| Q |
716 |
aacgatggaggtatgagcttcaaaagtcttg |
746 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |
|
|
| T |
23265816 |
aatgatggaggtatgagcctcaaaagtcttg |
23265786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 613 - 655
Target Start/End: Original strand, 23906856 - 23906898
Alignment:
| Q |
613 |
tgatgaaattgaaaaaatgattaactccttttggtggggtcat |
655 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
23906856 |
tgatgaaattgaaaagatgatcaactccttttggtggggtcat |
23906898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 488
Target Start/End: Complemental strand, 25596590 - 25596534
Alignment:
| Q |
432 |
tccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttgg |
488 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
25596590 |
tccatgatcggccgtagtaaaaaagcaaccttcagtttcatcaaggatagagtttgg |
25596534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 21708966 - 21708903
Alignment:
| Q |
381 |
attcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggcc |
444 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||| ||||| || || |||| ||||| |
|
|
| T |
21708966 |
attcttggtgttcaagttgttttgggtataggtaaatatttgggcctaccttctatgacaggcc |
21708903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 21713509 - 21713446
Alignment:
| Q |
381 |
attcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggcc |
444 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||| ||||| || || |||| ||||| |
|
|
| T |
21713509 |
attcttggtgttcaagttgttttgggtataggtaaatatttgggcctaccttctatgacaggcc |
21713446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 655
Target Start/End: Original strand, 4166802 - 4166843
Alignment:
| Q |
614 |
gatgaaattgaaaaaatgattaactccttttggtggggtcat |
655 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
4166802 |
gatgaaattgaaaaaatgatgaataccttttggtggggtcat |
4166843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 21172071 - 21172164
Alignment:
| Q |
41 |
gggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgatt |
134 |
Q |
| |
|
|||||| ||||||||||| | || || ||||||||||| || |||||||||| || |||||| ||||||| ||||| ||||| || |||||| |
|
|
| T |
21172071 |
gggacctatcattccaggacgtgggttaaggcaaggtgatccgttgtcaccatacttattcattctttgtgctgaaggtttatcggcgttgatt |
21172164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 51 - 740
Target Start/End: Original strand, 21502955 - 21503645
Alignment:
| Q |
51 |
attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagcta |
150 |
Q |
| |
|
||||| |||||||| |||||||| || |||||| | ||||| ||| | || ||||||||||||||||| |||||||| | |||||||||||| |||| | |
|
|
| T |
21502955 |
attcctggtagaggcttgaggcagggagaccctttatcaccgtatctttttattatttgtgcagaaggtttatccgcgcttattcggaaagcataagcaa |
21503054 |
T |
|
| Q |
151 |
gaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaa |
250 |
Q |
| |
|
|||| ||||| ||||| | || | || || | || || || || | ||||| || || ||| |||| || || |||||||| | |||||||||||| |
|
|
| T |
21503055 |
gaggagaaattaatggtgtgaaggtttgtaatattgcgcccattatatcacatctactttttgcagatgactgtttcttattttttcatgctacttcaaa |
21503154 |
T |
|
| Q |
251 |
tcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtt |
350 |
Q |
| |
|
|||||| |||||||||||| |||| |||| | ||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
21503155 |
tcaagctttgaaaatgagaaatattctatcaacttatgagaaagtgtcaggtcaagcggttaatctccaaaagtcataaatcttttgtagcagaaatgtt |
21503254 |
T |
|
| Q |
351 |
tcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccgaagta |
450 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||| ||| | || || || || |||||||||||| | || | || || ||||| || ||||| | |
|
|
| T |
21503255 |
tcaacaactgatcataataatatagccaatatccttggagttaaagcggtgttaggcacaggtaaatatcttgggttaccttctatgattggtcgaagca |
21503354 |
T |
|
| Q |
451 |
agaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgttaattaa |
549 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||| |||||||||||||||||| ||||| |||||| |||| || ||||| ||| |||||||||| || || |
|
|
| T |
21503355 |
agaaagctacctttacttttatcaaggatagagtttggaaaaagattaattcgtggagtagtaaatgtctctctaaagctggacgagaagtgttgataaa |
21503454 |
T |
|
| Q |
550 |
gtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtgg |
649 |
Q |
| |
|
| ||||||||| || || ||||| ||||| ||||| |||| |||||||| || || |||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
21503455 |
atatgtccttcaatcaatcccaacatattttatgagcctatttactcttccttcctcgttgtgtgatgaaattgagaaaatgatgaattctttttggtgg |
21503554 |
T |
|
| Q |
650 |
ggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaa |
740 |
Q |
| |
|
||||| || || ||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| || |||||||| |||||||| |||| |
|
|
| T |
21503555 |
ggtcactcaggatcacataggaagggtatacactggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaa |
21503645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 291 - 656
Target Start/End: Original strand, 5633226 - 5633592
Alignment:
| Q |
291 |
aaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtg |
390 |
Q |
| |
|
||||| |||||||||| ||||| ||||| || || ||||| ||||| |||| |||||||| | || ||||||||| ||||| ||||||||||| | |
|
|
| T |
5633226 |
aaagcatcaggtcaagtagttaacctccagaaatcagaaatcttttgcagcaaaaatgtttcgaccgcgaatcataatagtatagctaatattcttggag |
5633325 |
T |
|
| Q |
391 |
ttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaa |
490 |
Q |
| |
|
|||| ||||| ||||| || ||||| ||| | || || || || |||||||| |||| ||||||||||| ||||||||||| |||||||| | ||||| |
|
|
| T |
5633326 |
ttcaagctgtattgggcactggtaagtatcttggtcttccatctatgataggaagaagcaagaaagcaacttttaatttcattaaggatagggtgtggaa |
5633425 |
T |
|
| Q |
491 |
aaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagttta |
589 |
Q |
| |
|
|||||||| | |||||||||||| | || || |||||| | ||||||| |||||||| | ||||||||||||||| || || || || |||||| || |
|
|
| T |
5633426 |
gaagattaactcatggagcagtaaatgcctctccaaagcatgtcgagaagttttaattaaatttgtccttcagtctattcccacatactttatgagtcta |
5633525 |
T |
|
| Q |
590 |
ttcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcatt |
656 |
Q |
| |
|
|||||| | || |||||||| || ||||| |||||||| ||||| || || || ||||||||||||| |
|
|
| T |
5633526 |
ttcactttaccgtcatctctttgcgatgagattgaaaagatgatgaattcattctggtggggtcatt |
5633592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 349 - 751
Target Start/End: Original strand, 7807748 - 7808157
Alignment:
| Q |
349 |
tttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggcc---- |
444 |
Q |
| |
|
|||||||||| || || |||||||| | || |||||||| ||||| ||||| |||||| |||||||||||||||||| || || ||| |||| |
|
|
| T |
7807748 |
tttcaagggcagagcacaataatattgctaacattcttggagttcaagctgtgttgggtgtaggtaaatatttaggcctgccttctatgttaggtacgta |
7807847 |
T |
|
| Q |
445 |
gaagtaaga-aagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgt |
542 |
Q |
| |
|
||||||| | || || |||||||| || ||||| |||||||||| || || |||| ||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
7807848 |
gaagtaaaacaaatcacttttaattttattaaggaacgaatttggaagaaaataaattcttggagcagtaaaagtctttcaaaagcaggaagagaagtgt |
7807947 |
T |
|
| Q |
543 |
taattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaa-atgattaactcct |
641 |
Q |
| |
|
|||| || ||||| || || ||||| || || ||||| ||||||||||||||| |||||| ||| | |||||||||||||||||| ||||| ||||||| |
|
|
| T |
7807948 |
taatcaaatctgttctgcaatctattcctacttattttatgagtttattcactattccctagtctttatgtgatgaaattgaaaaagatgatgaactcct |
7808047 |
T |
|
| Q |
642 |
tttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaag |
741 |
Q |
| |
|
| |||||||| ||||| | ||| | | ||||||||||||| | |||||||||||||| ||||| || || || | || |||||||||||||| |
|
|
| T |
7808048 |
tctggtggggacattctgaatcacaaaatatatgtatacattggatgttttgggataaattatatatgcacaagaaagacagtggaatgagcttcaaaag |
7808147 |
T |
|
| Q |
742 |
tcttggtact |
751 |
Q |
| |
|
||| |||||| |
|
|
| T |
7808148 |
tctaggtact |
7808157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 732
Target Start/End: Original strand, 22908507 - 22908683
Alignment:
| Q |
557 |
cttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactcc-ttttggtggggtcat |
655 |
Q |
| |
|
||||| ||||| || |||||||| |||||||| |||||||| || ||||| |||||||||||||||| |||||| || ||| ||||||||||||||| |
|
|
| T |
22908507 |
cttcaatctatccctacctattttatgagtttgttcactctccctgtctctctttgtgatgaaattgaaagaatgatgaattcctttttggtggggtcat |
22908606 |
T |
|
| Q |
656 |
tcgg--gctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgag |
732 |
Q |
| |
|
|||| | |||| || || ||||| | ||| |||||||||||||| |||| ||||| || || |||||||||||||| |
|
|
| T |
22908607 |
tcgggaggtcaa--agtagaggtattaactggctttcttgggataaactatctatgcacaagaatgatggaggtatgag |
22908683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 563 - 740
Target Start/End: Original strand, 15026033 - 15026210
Alignment:
| Q |
563 |
tctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattcgg--g |
660 |
Q |
| |
|
||||| || |||||||| |||||||| |||||||| | ||||| ||||||| |||||||| |||||| || |||||||||||||||||||||| | |
|
|
| T |
15026033 |
tctatccctacctattttatgagtttgttcactctccttgtctctctttgtgatggaattgaaagaatgatgaattccttttggtggggtcattcgggag |
15026132 |
T |
|
| Q |
661 |
ctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaa |
740 |
Q |
| |
|
|||| || || ||||| | ||| |||||||||||||| | || ||||| || || |||||||||||||| ||||||| |
|
|
| T |
15026133 |
gtcaa--agtagaggtattaactggctttcttgggataaagtgtctatgcacaagaatgatggaggtatgagtttcaaaa |
15026210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 22907973 - 22908070
Alignment:
| Q |
21 |
cttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
118 |
Q |
| |
|
|||||||||||||||| ||| | || ||||||||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||||||| ||||| |
|
|
| T |
22907973 |
cttgtcaatggtaatgctacaagtccaatcattccaggaagaggtttaagacaaggagacccactatccccatatttgtttattatttgtgctgaagg |
22908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 557 - 654
Target Start/End: Complemental strand, 19064923 - 19064825
Alignment:
| Q |
557 |
cttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaa--tgattaactccttttggtggggtca |
654 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | || |||||||| ||||| ||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
19064923 |
cttcagtctataccaacttattttatgagcatgtttactcttcc-tcatccttgtgtgatgaaattgaaaaaaaatgatgaactcattttggtggggtca |
19064825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 12352839 - 12352798
Alignment:
| Q |
80 |
ccctctgtcaccatatttgttcattatttgtgcagaagggtt |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
12352839 |
ccctctgtcaccatatttgtacattatttgtgctgaagggtt |
12352798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 41599279 - 41599344
Alignment:
| Q |
381 |
attcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccga |
446 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | ||||| || || |||||||||||| |
|
|
| T |
41599279 |
attcttggtgttcaaattgttttgggtacaggtaaatatctgggcctaccttctatgataggccga |
41599344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 3207214 - 3207159
Alignment:
| Q |
72 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgc |
127 |
Q |
| |
|
||||| |||||||| || ||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
3207214 |
caaggggaccctctttctccatacttgtttattatttgtgcagaaggtttatccgc |
3207159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 34233064 - 34233031
Alignment:
| Q |
58 |
gtagaggtttgaggcaaggtgaccctctgtcacc |
91 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
34233064 |
gtaggggtttgaggcaaggtgaccctctgtcacc |
34233031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 24 - 742
Target Start/End: Complemental strand, 205317 - 204609
Alignment:
| Q |
24 |
gtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttat |
123 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||| | ||||||||| | || ||||||||||||||||| |||| |
|
|
| T |
205317 |
gtcaatggtaatgttactggacctattattcctggtagaggcttgaggcagggagaccccttatcaccatatctttttattatttgtgcagaaggtttat |
205218 |
T |
|
| Q |
124 |
ccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattg |
223 |
Q |
| |
|
||| | ||||||||||| ||||| ||||| ||||| ||||| | || | || || |||| || || || | ||||| || || ||| | || || |
|
|
| T |
205217 |
tcgcgcttattcggaaagctgaagcaagaggagaaatgaatggtgtgaaggtttgtaataatgcgcccattatatcacatctactttttgcagacgactg |
205118 |
T |
|
| Q |
224 |
ctttttatttttc-cgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaa |
322 |
Q |
| |
|
|| |||||||| | |||||||||||||||||| |||||||||||| |||| |||| | |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
205117 |
tttcttatttttttcatgctacttcaaatcaagctttgaaaatgagaaatattctatcaacttatgagaaagcgtcaggtcaagcggttaatctcaaaaa |
205018 |
T |
|
| Q |
323 |
gtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaatattta |
422 |
Q |
| |
|
||| ||| | ||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||| ||| | || || | |||| |||||||||| | |
|
|
| T |
205017 |
gtcagaagtcttttgtagcagaaatgtttcaacagctgatcataataatatagctaatatccttggagttaaagcggtgctaggtataggtaaatatctt |
204918 |
T |
|
| Q |
423 |
ggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaagtctttc |
522 |
Q |
| |
|
|| | || || ||||| || ||||| |||||||| || |||| ||| |||||||||||| ||||||||||||| |||| ||||| |||||| ||| |
|
|
| T |
204917 |
gggttaccttctatgattggtcgaagcaagaaagctacttttacttttatcaaggatagagtttggaaaaagatcaattcgtggagtagtaaa-tct--- |
204822 |
T |
|
| Q |
523 |
gaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaatt |
622 |
Q |
| |
|
|| ||||||||| || || ||||||||||| || || ||||| ||||| ||||| |||| ||||| || || || |||||||||||||| |
|
|
| T |
204821 |
-------ggtcgagaagtgtagataaaatctgtccttcaatcaatcccaacatattttatgagcctatttactctgccttcgtcgttgtgtgatgaaatt |
204729 |
T |
|
| Q |
623 |
gaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatg |
722 |
Q |
| |
|
|| |||||||| || || |||||||||||||| | || ||| ||||| |||||||| ||||| ||||||||||||||||| ||||| || || |||| |
|
|
| T |
204728 |
gagaaaatgatgaattctttttggtggggtcacttaggatcacataggaaaggtatacactggatgtcttgggataaattatctatgcacaagaaagatg |
204629 |
T |
|
| Q |
723 |
gaggtatgagcttcaaaagt |
742 |
Q |
| |
|
|||| |||||||| |||||| |
|
|
| T |
204628 |
gagggatgagctttaaaagt |
204609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 136; Significance: 2e-70; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 213 - 747
Target Start/End: Complemental strand, 7320 - 6785
Alignment:
| Q |
213 |
gcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtta |
312 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||| ||| || ||||||| |||||||||| |||| | || |||||||||||||||||||||||| |||| |
|
|
| T |
7320 |
gcatatgactgcttcttgttttttcgtgctaattcgaaccaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagatgtta |
7221 |
T |
|
| Q |
313 |
atctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacagg |
412 |
Q |
| |
|
||||||||||||| ||| |||||||| |||| ||||| ||||||||||||||||||| || || ||||| ||| | ||||| ||||||||||| |
|
|
| T |
7220 |
atctccaaaagtcaaaaaaaaattgtagcaagaatttttcaccagctgatcataataatatagctaacatccttggagttaaagctgtcttgggtacagg |
7121 |
T |
|
| Q |
413 |
taaatatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagt |
512 |
Q |
| |
|
|||||| ||| | ||||| ||||| ||||||||||||||||| || ||||| ||||||||||||| | ||||||| || ||||||| ||||||||| |
|
|
| T |
7120 |
taaataccaaggattaccctcgatgattggccgaagtaagaaagctacatttaacttcatcaaggataaagtttggaagaaaattaattcgtggagcagt |
7021 |
T |
|
| Q |
513 |
aaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgt |
611 |
Q |
| |
|
||| | || || || || |||||||||| || ||||| | ||| ||||| || || ||||| ||||| ||||| ||||| ||||| || || | ||| |
|
|
| T |
7020 |
aaatgcctctctaaggcttgaagagaagtattgattaaatttgttcttcaatcaattccaacgtattttatgagcttatttactctaccttcgttgttgt |
6921 |
T |
|
| Q |
612 |
gtgatgaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgca |
711 |
Q |
| |
|
||||||| ||||| || ||||| ||||| ||||| ||| |||| || || |||| | || || ||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
6920 |
gtgatgagattgagaagatgatgaactctttttgttggcgtcactcaggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgca |
6821 |
T |
|
| Q |
712 |
taaaaacgatggaggtatgagcttcaaaagtcttgg |
747 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
6820 |
taaaaaagatggaggtatgagctttaaaaatcttgg |
6785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 11661 - 11524
Alignment:
| Q |
17 |
tgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
116 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| || ||||||| || ||||| ||||||||||||||| |
|
|
| T |
11661 |
tgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattgtcaccgtacttgtttattatttgtgcagaa |
11562 |
T |
|
| Q |
117 |
gggttatccgcattgattcggaaagcagaagctagagg |
154 |
Q |
| |
|
||| |||| ||| | ||||||||||||||||| ||||| |
|
|
| T |
11561 |
gggctatcagcactcattcggaaagcagaagcaagagg |
11524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 2e-70; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 213 - 747
Target Start/End: Original strand, 21706590 - 21707125
Alignment:
| Q |
213 |
gcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtta |
312 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||| ||| || ||||||| |||||||||| |||| | || |||||||||||||||||||||||| |||| |
|
|
| T |
21706590 |
gcatatgactgcttcttgttttttcgtgctaattcgaaccaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagatgtta |
21706689 |
T |
|
| Q |
313 |
atctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacagg |
412 |
Q |
| |
|
||||||||||||| ||| |||||||| |||| ||||| ||||||||||||||||||| || || ||||| ||| | ||||| ||||||||||| |
|
|
| T |
21706690 |
atctccaaaagtcaaaaaaaaattgtagcaagaatttttcaccagctgatcataataatatagctaacatccttggagttaaagctgtcttgggtacagg |
21706789 |
T |
|
| Q |
413 |
taaatatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagt |
512 |
Q |
| |
|
|||||| ||| | ||||| ||||| ||||||||||||||||| || ||||| ||||||||||||| | ||||||| || ||||||| ||||||||| |
|
|
| T |
21706790 |
taaataccaaggattaccctcgatgattggccgaagtaagaaagctacatttaacttcatcaaggataaagtttggaagaaaattaattcgtggagcagt |
21706889 |
T |
|
| Q |
513 |
aaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgt |
611 |
Q |
| |
|
||| | || || || || |||||||||| || ||||| | ||| ||||| || || ||||| ||||| ||||| ||||| ||||| || || | ||| |
|
|
| T |
21706890 |
aaatgcctctctaaggcttgaagagaagtattgattaaatttgttcttcaatcaattccaacgtattttatgagcttatttactctaccttcgttgttgt |
21706989 |
T |
|
| Q |
612 |
gtgatgaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgca |
711 |
Q |
| |
|
||||||| ||||| || ||||| ||||| ||||| ||| |||| || || |||| | || || ||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
21706990 |
gtgatgagattgagaagatgatgaactctttttgttggcgtcactcaggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgca |
21707089 |
T |
|
| Q |
712 |
taaaaacgatggaggtatgagcttcaaaagtcttgg |
747 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
21707090 |
taaaaaagatggaggtatgagctttaaaaatcttgg |
21707125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 21702249 - 21702386
Alignment:
| Q |
17 |
tgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
116 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| || ||||||| || ||||| ||||||||||||||| |
|
|
| T |
21702249 |
tgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattgtcaccgtacttgtttattatttgtgcagaa |
21702348 |
T |
|
| Q |
117 |
gggttatccgcattgattcggaaagcagaagctagagg |
154 |
Q |
| |
|
||| |||| ||| | ||||||||||||||||| ||||| |
|
|
| T |
21702349 |
gggctatcagcactcattcggaaagcagaagcaagagg |
21702386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 657
Target Start/End: Complemental strand, 4852946 - 4852892
Alignment:
| Q |
603 |
catctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattc |
657 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
4852946 |
catctatgtatgatgaaattgaaaaaatgatgaactccttttggtagggttattc |
4852892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 16983697 - 16983747
Alignment:
| Q |
275 |
tttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtc |
325 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
16983697 |
tttatccacttatgagaaagcttcaggtcaagcggttaatcttaaaaagtc |
16983747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 501
Target Start/End: Original strand, 16983866 - 16983922
Alignment:
| Q |
445 |
gaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaatt |
501 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||| |||||||| || ||||||| |
|
|
| T |
16983866 |
gaagtaagaaagaaacttttaatttcattaaggataggatttggaacaaaattaatt |
16983922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 7e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 291 - 654
Target Start/End: Complemental strand, 26383229 - 26382865
Alignment:
| Q |
291 |
aaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtg |
390 |
Q |
| |
|
||||| |||||||||| ||||| ||| | || || ||||| ||||| ||||| |||||||| | || |||||||||| ||||| ||||||||||| | |
|
|
| T |
26383229 |
aaagcatcaggtcaagaagttaacctctagaaatcagaaatcttttgcagcagaaatgtttcgaccgcggatcataatagtatagataatattcttggag |
26383130 |
T |
|
| Q |
391 |
ttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaa |
490 |
Q |
| |
|
|||| | ||| ||||| || ||||| ||| | || || || || |||||||| |||| ||||||||||| ||||||||||| |||||||| | ||||| |
|
|
| T |
26383129 |
ttcaagttgtattgggcactggtaagtatctgggtctgccatctatgataggaagaagcaagaaagcaacttttaatttcattaaggatagggtgtggaa |
26383030 |
T |
|
| Q |
491 |
aaagattaattattggagcagtaaagtctt-tcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagttta |
589 |
Q |
| |
|
|||||||| | |||||||||||| ||| || ||||||||| ||||||| |||||||| |||||| |||||||||| || || || || |||||| || |
|
|
| T |
26383029 |
gaagattaactcatggagcagtaaatgcttctccaaagcaggacgagaagttttaattaaatctgtcattcagtctattcccacatactttatgagtcta |
26382930 |
T |
|
| Q |
590 |
ttcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtca |
654 |
Q |
| |
|
|||||| | || |||||||| |||||||| |||||||| ||||| || || || ||||||||||| |
|
|
| T |
26382929 |
ttcactttaccgtcatctctttgtgatgagattgaaaagatgatgaattcattctggtggggtca |
26382865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 609 - 742
Target Start/End: Complemental strand, 13524706 - 13524573
Alignment:
| Q |
609 |
tgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaat |
708 |
Q |
| |
|
|||||||||||||||| |||||||| || || |||| ||||||||| || || ||| ||| | |||||||| | ||| ||||||||||||||||| || |
|
|
| T |
13524706 |
tgtgtgatgaaattgagaaaatgatgaattcttttttgtggggtcactcaggatcacatagaaaaggtatacacttgatgtcttgggataaattatctat |
13524607 |
T |
|
| Q |
709 |
gcataaaaacgatggaggtatgagcttcaaaagt |
742 |
Q |
| |
|
|||||| || ||| |||| |||||||| |||||| |
|
|
| T |
13524606 |
gcataagaaagatagagggatgagctttaaaagt |
13524573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 609 - 742
Target Start/End: Complemental strand, 13614241 - 13614108
Alignment:
| Q |
609 |
tgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaat |
708 |
Q |
| |
|
|||||||||||||||| |||||||| || || |||| ||||||||| || || ||| ||| | |||||||| | ||| ||||||||||||||||| || |
|
|
| T |
13614241 |
tgtgtgatgaaattgagaaaatgatgaattcttttttgtggggtcactcaggatcacatagaaaaggtatacacttgatgtcttgggataaattatctat |
13614142 |
T |
|
| Q |
709 |
gcataaaaacgatggaggtatgagcttcaaaagt |
742 |
Q |
| |
|
|||||| || ||| |||| |||||||| |||||| |
|
|
| T |
13614141 |
gcataagaaagatagagggatgagctttaaaagt |
13614108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 26383503 - 26383366
Alignment:
| Q |
17 |
tgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
116 |
Q |
| |
|
|||||||||||||| |||| || | || || || || ||||||||||| ||||| ||| |||||||||| ||||| ||| | || || || |||||| || |
|
|
| T |
26383503 |
tgttcttgtcaatgataatattgctggtccgattataccaggtagagggttgagacaatgtgaccctctttcaccttatctctttatcatatgtgcataa |
26383404 |
T |
|
| Q |
117 |
gggttatccgcattgattcggaaagcagaagctagagg |
154 |
Q |
| |
|
||||||| || | ||| |||| ||||| |||||||| |
|
|
| T |
26383403 |
aggttatcagctctcattaggaaggcagaggctagagg |
26383366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 7e-45; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 291 - 654
Target Start/End: Original strand, 33348153 - 33348517
Alignment:
| Q |
291 |
aaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtg |
390 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| || ||||| ||||| |||| |||||||| | | |||||||||| ||||| ||||||||||| | |
|
|
| T |
33348153 |
aaagcatcaggtcaagcagttaacctacaaaaatcagaaatcttttgcagcaaaaatgtttcgaccgaggatcataatagtatagctaatattcttggag |
33348252 |
T |
|
| Q |
391 |
ttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaa |
490 |
Q |
| |
|
|||| ||||| ||||| || ||||| ||| | || || || || |||||||| |||| ||||||||||| ||||||||||| |||||||| | ||||| |
|
|
| T |
33348253 |
ttcaagctgtattgggcactggtaagtatcttggtctgccatctatgataggaagaagcaagaaagcaacatttaatttcattaaggatagggtgtggaa |
33348352 |
T |
|
| Q |
491 |
aaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagttta |
589 |
Q |
| |
|
|||||||| | |||||||||||| | || || |||||||| ||||||| |||||||| | ||||||||||||||| || || || || |||||| || |
|
|
| T |
33348353 |
gaagattaactcatggagcagtaaatgcctctccaaagcaggtcgagaagttttaattaaatatgtccttcagtctattcccacatactttatgagtcta |
33348452 |
T |
|
| Q |
590 |
ttcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtca |
654 |
Q |
| |
|
|||||| | || |||||||| |||||||| |||||||| ||||| || || || ||||||||||| |
|
|
| T |
33348453 |
ttcactttaccgtcatctctttgtgatgagattgaaaagatgatgaattcattctggtggggtca |
33348517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 445 - 654
Target Start/End: Original strand, 26368803 - 26369013
Alignment:
| Q |
445 |
gaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaa-agtctttcgaaagcaggaagagaagtgtt |
543 |
Q |
| |
|
|||||||||||||||| || | || || || || |||||||||||||||||||||| ||||| ||||| |||||||| || || || |||| || || |
|
|
| T |
26368803 |
gaagtaagaaagcaactttcgagtttattaaagacagaatttggaaaaagattaattcctggagtagtaagagtctttctaaggctggtcgagaggtttt |
26368902 |
T |
|
| Q |
544 |
aattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttt |
643 |
Q |
| |
|
|| ||| || || ||||| || ||| ||||||| ||||||||| | || |||| || || || ||||||||||||||||||||||| | || || ||| |
|
|
| T |
26368903 |
aactaaatcggtgcttcaatccatatcaacctacttcatgagtctgtttactcaaccatcgtcattgtgtgatgaaattgaaaaaatgttaaattctttt |
26369002 |
T |
|
| Q |
644 |
tggtggggtca |
654 |
Q |
| |
|
| ||||||||| |
|
|
| T |
26369003 |
ttgtggggtca |
26369013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 33347879 - 33347986
Alignment:
| Q |
17 |
tgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaa |
116 |
Q |
| |
|
|||||||||||| |||||| || | || || || || ||||||||||| ||||| |||||||||||||| ||||| ||| | || || || ||||||||| |
|
|
| T |
33347879 |
tgttcttgtcaacggtaatattgctggtccgattataccaggtagagggttgagacaaggtgaccctctttcaccttatctctttatcatatgtgcagaa |
33347978 |
T |
|
| Q |
117 |
gggttatc |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
33347979 |
gggttatc |
33347986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 734
Target Start/End: Complemental strand, 24449823 - 24449770
Alignment:
| Q |
681 |
attggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagct |
734 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
24449823 |
attggctttcttgggataaattatccatgcataaaaatgatggaggaatgagct |
24449770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 540
Target Start/End: Complemental strand, 21086760 - 21086651
Alignment:
| Q |
432 |
tccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaa-gtctttcgaaagcag |
530 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||| | ||||||||| |||||| | ||| | ||||||| | ||||||||||||| || | || ||||||| |
|
|
| T |
21086760 |
tccatggtaggacgaagtaaaaaagcaaccttcagtttcatcaaagatagagtgtggtagaagattagtagttggagcagtaaatgtttgtctaaagcag |
21086661 |
T |
|
| Q |
531 |
gaagagaagt |
540 |
Q |
| |
|
|||| ||||| |
|
|
| T |
21086660 |
gaagggaagt |
21086651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 471 - 742
Target Start/End: Original strand, 13501682 - 13501954
Alignment:
| Q |
471 |
atcaaggatagaatttggaaaaagattaattattggagcagtaaa-gtctttcgaaagcaggaagagaagtgttaattaagtctgtccttcagtctatac |
569 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||| |||||| |||| || ||||| || |||||||||| || || | ||||||||| || || | |
|
|
| T |
13501682 |
atcaaggatagagtttggaaaaagatcaattcgtggagtagtaaatgtctctctaaagctggtcgagaagtgttgataaaatttgtccttcaatcaatcc |
13501781 |
T |
|
| Q |
570 |
caacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattcgggctcaagtag |
669 |
Q |
| |
|
|||| ||||| ||||| |||| ||||| || || || |||||||||||||||| |||||||| || || |||||||||||||| || || ||| ||| |
|
|
| T |
13501782 |
caacatattttatgagcctatttactctcccttcgtcattgtgtgatgaaattgagaaaatgatgaattctttttggtggggtcactcaggatcacatag |
13501881 |
T |
|
| Q |
670 |
gagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaagt |
742 |
Q |
| |
|
|| |||||||| |||| ||||||||||||||||| ||||| || || |||||||| |||||||| |||||| |
|
|
| T |
13501882 |
gaaaggtatacaccggatgtcttgggataaattatctatgcacaagaaagatggagggatgagctttaaaagt |
13501954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 31662832 - 31662767
Alignment:
| Q |
381 |
attcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccga |
446 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||| | |||||||| || |||||||||||| |
|
|
| T |
31662832 |
attcttggcgttcaagttgttttgggtacaggtaaatatctgggcctcccttctatgataggccga |
31662767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 31933564 - 31933629
Alignment:
| Q |
381 |
attcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccga |
446 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||| | |||||||| || |||||||||||| |
|
|
| T |
31933564 |
attcttggcgttcaagttgttttgggtacaggtaaatatatgggcctcccttctatgataggccga |
31933629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 657
Target Start/End: Complemental strand, 27503171 - 27503083
Alignment:
| Q |
569 |
ccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtcattc |
657 |
Q |
| |
|
||||||||||| |||||||||||||| || | || ||| | ||||||||||||||||| ||||| || || |||||||||||| |||| |
|
|
| T |
27503171 |
ccaacctattttatgagtttattcacactcacgtcgtctttatgtgatgaaattgaaaagatgatgaattctttttggtggggttattc |
27503083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 10982965 - 10982895
Alignment:
| Q |
165 |
ggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttattttt |
235 |
Q |
| |
|
||||| ||||||||||| |||| |||||| |||| |||||| ||||| ||| ||||||||||| ||||||| |
|
|
| T |
10982965 |
ggagctaaaatctgcaataatgctccaattatttcgcatctgctctttgcagatgattgctttctattttt |
10982895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 31952897 - 31952962
Alignment:
| Q |
381 |
attcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggccga |
446 |
Q |
| |
|
|||||||| ||||| | ||||||||||||| |||||||| | |||||||| || |||||||||||| |
|
|
| T |
31952897 |
attcttggcgttcaagttgttttgggtacatgtaaatatatgggcctcccttctatgataggccga |
31952962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 651
Target Start/End: Complemental strand, 6751898 - 6751844
Alignment:
| Q |
597 |
ttccctcatctctgtgtgatgaaattgaaaaaatgattaactccttttggtgggg |
651 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
6751898 |
ttccctcatctcttggtgatgaaatcgaaaaaatgatgaattctttttggtgggg |
6751844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 36788736 - 36788801
Alignment:
| Q |
378 |
aatattcttggtgttcatgctgttttgggtacaggtaaatatttaggcctcccctccatgataggc |
443 |
Q |
| |
|
||||||||||||||||| | ||||| || |||| |||||||||||||| || |||||||||||| |
|
|
| T |
36788736 |
aatattcttggtgttcaggtagttttaggcacagacaaatatttaggccttccatccatgataggc |
36788801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 44493034 - 44493107
Alignment:
| Q |
51 |
attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc |
124 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||| || || |||||||||||||||||||| || ||||| ||||| |
|
|
| T |
44493034 |
attccagggcgaggtctgagacaaggggacccgctttccccatatttgttcattatttgcgcggaaggtttatc |
44493107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 327 - 740
Target Start/End: Complemental strand, 53973 - 53559
Alignment:
| Q |
327 |
gaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattcttggtgttcatgctgttttgggtacaggtaaatatttaggcc |
426 |
Q |
| |
|
||||| ||||||||||||||||| |||| | || |||||||||||| | ||||| ||||| ||||| ||||| | ||||| || || || ||||| |
|
|
| T |
53973 |
gaaatcttttgtagcaggaatgtgtcaaatgttgttcataataatattgcaaatatccttggagttcaagctgtgctaggtaccggcaagtacttaggtt |
53874 |
T |
|
| Q |
427 |
tcccctccatgataggccgaagtaagaaagcaacctttaatttcatcaaggatagaatttggaaaaagattaattattggagcagtaaa-gtctttcgaa |
525 |
Q |
| |
|
| || || |||||||| ||||||||||||| || || || || || ||||| | ||||||||| || ||||| | ||| || || ||| |||| || || |
|
|
| T |
53873 |
tgccatctatgataggaagaagtaagaaagctactttcaactttattaaggacataatttggaagaaaattaactcttgaagtagcaaatgtctctcaaa |
53774 |
T |
|
| Q |
526 |
agcaggaagagaagtgttaattaagtctgtccttcagtctataccaacctatttcatgagtttattcactcttccctcatctctgtgtgatgaaattgaa |
625 |
Q |
| |
|
| ||| | || ||||| ||||| | || || || ||||| |||||||||||||||||||| |||||| | ||||| | || ||||||||||||||| |
|
|
| T |
53773 |
ggtagggcgcgatgtgtttattaaattagttctgcaatctatcccaacctatttcatgagtttgttcactttaccctccaccctatgtgatgaaattgaa |
53674 |
T |
|
| Q |
626 |
aaaatgattaactccttttggtggggtcattcgggctcaagtaggagcggtatacattggatttcttgggataaattatcaatgcataaaaacgatggag |
725 |
Q |
| |
|
|||||| | || || || ||||||||||| || || ||| ||||| || ||||||||| |||| |||||| |||| || ||||||||||| ||| ||| |
|
|
| T |
53673 |
aaaatgttgaattctttctggtggggtcactcaggtgcaaataggaaaggaatacattggttttcatgggatgaattgtctatgcataaaaaagattgag |
53574 |
T |
|
| Q |
726 |
gtatgagcttcaaaa |
740 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
53573 |
gtatgggctttaaaa |
53559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0530 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 9733 - 9779
Alignment:
| Q |
72 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
9733 |
caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg |
9779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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