View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8938_low_9 (Length: 631)
Name: NF8938_low_9
Description: NF8938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8938_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 35 - 617
Target Start/End: Complemental strand, 31266294 - 31265712
Alignment:
| Q |
35 |
tttaaaggggttctcaatttactaatttaacttcattccataatattaaagtatggttgatgaaataaattgctccactaataagactactatgactggt |
134 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31266294 |
tttaaaggggttttcaatttactaatttaacttcattccataatattaaagtatggttgatgaaataaattgctccactaataagactactatgactagt |
31266195 |
T |
|
| Q |
135 |
cggaatcaatttgttttattggacaaactctgttggcttggaaatggaactgttaattgtttagagtggtttttcttacttttaacacctgacataccaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31266194 |
cggaatcaatttgttttattggacaaactctgttggcttggaaatggaactgttaattgtttagagtggtttttcttacttttaacacctgacataccaa |
31266095 |
T |
|
| Q |
235 |
agcatgacttgannnnnnnaaccccaaaaggaatctagaacttatctttcaaacttcagctaggtggtttcatcttaatcttagtttatgaaaacttgtt |
334 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31266094 |
agcatgacctgctttttttaaccccaaaaggaatctagaacttatctttcaaacttcagctaggtggtttcatcttaatcttagtttaggaaaacttgtt |
31265995 |
T |
|
| Q |
335 |
cattattcccccaccctgtgttcgcattaaattatttatcgaatgcttaatggagaggaaacttttgagcagtatgcttaagcatggctcaggctagtgc |
434 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31265994 |
cattattcccccaccctgcgttcacattaaattatttatcgaatgcttaatggagaggaaacttttgggcagtatgcttaagcatggctcaggctagtgc |
31265895 |
T |
|
| Q |
435 |
ttagatgttggaacacttaatcgacatagagacagacacttagacgtgggtttcggttcctttgtggaaagtgaaaggtttgattgaaataattaataaa |
534 |
Q |
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| T |
31265894 |
ttagatgttggaacacttaatcgacatagagacagacacttagacgtgggtttcggttcctttgtggaaagtgagaggtttgattgaaataattaataaa |
31265795 |
T |
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| Q |
535 |
ttcacgaaaacataatgcgagttgagtttgagcatattggattagttgttatagctcttcgagttcaaaaactagtatttggt |
617 |
Q |
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| T |
31265794 |
ttcacgaaaacataatgcgagttgagtttgagaatattggattagttgttatagctcttcgagttcaaaaactagtatttggt |
31265712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 402 - 533
Target Start/End: Complemental strand, 31237834 - 31237704
Alignment:
| Q |
402 |
agcagtatgcttaagcatggctcaggctagtgcttagatgttggaacacttaatcgacatagagacagacacttagacgtgggtttcggttcctttgtgg |
501 |
Q |
| |
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|||||||||||||| |||||||| ||| | |||||||||||||||||||||||||| || ||||| ||||| ||| ||| |||| | |||||| |||| |
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| T |
31237834 |
agcagtatgcttaaacatggctccggccaatgcttagatgttggaacacttaatcg-cagagagatagacaattaaacgcgggtcccagttcctgtgtgt |
31237736 |
T |
|
| Q |
502 |
aaagtgaaaggtttgattgaaataattaataa |
533 |
Q |
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|||||||| | |||||||||||||| |||||| |
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| T |
31237735 |
aaagtgaatgttttgattgaaataactaataa |
31237704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 31238321 - 31238239
Alignment:
| Q |
48 |
tcaatttactaatttaacttcattccataatattaaagtatggttgatgaaataaattgctccactaataagactactatgact |
131 |
Q |
| |
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|||||||||||||| ||||||||| |||||||| || || ||||||||||||||| | ||| ||||| |||||||||||||||| |
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| T |
31238321 |
tcaatttactaatt-aacttcattgcataatataaacgtgtggttgatgaaataagtagcttcactagtaagactactatgact |
31238239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 137 - 311
Target Start/End: Complemental strand, 31238210 - 31238039
Alignment:
| Q |
137 |
gaatcaatttgttttattggacaaactctgttggcttggaaatggaactgt-taattgtttagagtggtttttcttacttttaacacctgacataccaaa |
235 |
Q |
| |
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||||| |||| ||||||||||||||||| ||| ||| ||||||| || ||| ||| ||||||| |||||| ||||||||||| | | || || |||||| |
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| T |
31238210 |
gaatccatttattttattggacaaactcagtttgctgggaaatgaaattgtctaagtgtttagtgtggttgttcttactttttataattgccaaaccaaa |
31238111 |
T |
|
| Q |
236 |
gcatgacttgannnnnnnaaccccaaaaggaatctagaacttatctttcaaacttcagctaggtggtttcatctta |
311 |
Q |
| |
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| T |
31238110 |
gcatgaaatgattttt---accccaaaaagaatcttgaacttgtctttcaaacttcag-taggtggtttcgtctta |
31238039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 31254699 - 31254650
Alignment:
| Q |
255 |
accccaaaaggaatctagaacttatctttcaaacttcagctaggtggtttc |
305 |
Q |
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| T |
31254699 |
accccaaaaagaatcttgaacttgtctttcaaacttcag-taggtggtttc |
31254650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 31254834 - 31254768
Alignment:
| Q |
48 |
tcaatttactaatttaacttcattccataatattaaagtatggttgatgaaataaattgctccacta |
114 |
Q |
| |
|
|||||||||||||| ||||||||| | || ||| |||| ||||||||||||||||| ||| ||||| |
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| T |
31254834 |
tcaatttactaattcaacttcattgcgtagtataaaagggtggttgatgaaataaatagcttcacta |
31254768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 525
Target Start/End: Complemental strand, 31254403 - 31254326
Alignment:
| Q |
448 |
cacttaatcgacatagagacagacacttagacgtgggtttcggttcctttgtggaaagtgaaaggtttgattgaaata |
525 |
Q |
| |
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|||||||| | || ||||| ||||||||| |||||||| | |||||| | |||||||||||| ||||||||||||| |
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| T |
31254403 |
cacttaattggcagagagatagacacttaaacgtgggtcccagttcctgtacggaaagtgaaagttttgattgaaata |
31254326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 14733450 - 14733403
Alignment:
| Q |
137 |
gaatcaatttgttttattggacaaactctgttggcttggaaatggaac |
184 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||| ||||||||||| |
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| T |
14733450 |
gaatcaatttattttattggacaaactctgtttgctgggaaatggaac |
14733403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 526
Target Start/End: Complemental strand, 14733190 - 14733126
Alignment:
| Q |
462 |
agagacagacacttagacgtgggtttcggttcctttgtggaaagtgaaaggtttgattgaaataa |
526 |
Q |
| |
|
||||| ||||||||| |||||||| |||||| |||| ||||||| ||||||||||||||||| |
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| T |
14733190 |
agagatagacacttaaacgtgggtcgtagttcctgtgtgaaaagtgagaggtttgattgaaataa |
14733126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 476
Target Start/End: Original strand, 16132696 - 16132770
Alignment:
| Q |
402 |
agcagtatgcttaagcatggctcaggctagtgcttagatgttggaacacttaatcgacatagagacagacactta |
476 |
Q |
| |
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|||||||||||| |||||||||| ||| | |||||||||||| ||||| ||||||| || |||| ||||||||| |
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| T |
16132696 |
agcagtatgctttagcatggctccggccaatgcttagatgttagaacagttaatcggcagagagttagacactta |
16132770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 16132210 - 16132267
Alignment:
| Q |
47 |
ctcaatttactaatttaacttcattccataatattaaagtatggttgatgaaataaat |
104 |
Q |
| |
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|||| ||||||||||||||||||||| |||||| ||||| ||||||| ||||||||| |
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| T |
16132210 |
ctcagtttactaatttaacttcattctgtaatataaaagtgtggttgacgaaataaat |
16132267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 16132379 - 16132488
Alignment:
| Q |
192 |
tgtttagagtggtttttcttacttttaacacctgacataccaaagcatgacttgannnnnnnaaccccaaaaggaatctagaacttatctttcaaacttc |
291 |
Q |
| |
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||||||||||||| ||||||||||| | || || |||||||||||||| | ||| ||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
16132379 |
tgtttagagtggtagttcttactttttatacttgccataccaaagcatggcatgatttttg--accccaaaaagaatcttgaacttgtctttcaaacttc |
16132476 |
T |
|
| Q |
292 |
agctaggtggttt |
304 |
Q |
| |
|
|| |||||||||| |
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|
| T |
16132477 |
ag-taggtggttt |
16132488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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