View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_high_5 (Length: 420)
Name: NF8939_high_5
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 391
Target Start/End: Original strand, 10069047 - 10069415
Alignment:
| Q |
23 |
agcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggttag |
122 |
Q |
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| T |
10069047 |
agcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcaaggaaagaaatcgagagaagtggttag |
10069146 |
T |
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| Q |
123 |
gcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgg |
222 |
Q |
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| T |
10069147 |
gcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgcgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgg |
10069246 |
T |
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| Q |
223 |
gattatttaatttctgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttt |
322 |
Q |
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| T |
10069247 |
gattatttaatttttgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttt |
10069346 |
T |
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| Q |
323 |
tggtggtttcattcttcttgtttttgagacgattaactaaacgcaacgcagatactcacatgcctcttt |
391 |
Q |
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| T |
10069347 |
tggtggtttcattcttcttgtttttgagacgattaactgaacgcaacgcagaaactcacatgcctcttt |
10069415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 10106805 - 10106970
Alignment:
| Q |
23 |
agcaaaaaattgcttcatcttcaatgcttccatttctg---aaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggt |
119 |
Q |
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| T |
10106805 |
agcaaaaatttgattcatcttcaatgcctccatttctataaaaaaaaaacttggaaattttctttcttttcttttgaggaaagaaagtgagaggaatggg |
10106904 |
T |
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| Q |
120 |
taggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
185 |
Q |
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| T |
10106905 |
taggcaaatacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
10106970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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