View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_high_7 (Length: 393)
Name: NF8939_high_7
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 8557871 - 8557507
Alignment:
| Q |
17 |
gatacttggcatcaaaatcatcaataagctttacaaaagggaggaaggaatgtttattccgaaaaccttccagaccattaggaagttcggacaagtcaaa |
116 |
Q |
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| T |
8557871 |
gatacttggcatcaaaatcatcaataagctttacaaaagtgaggaaggaatgtttattccgaaaaccttccagaccattaggaagttcggacaagtcaaa |
8557772 |
T |
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| Q |
117 |
gtagtatattttgttaactggatcacaaccctcttcaatagagagaagaacatactgcaaaatcaaataaagcagtaagtttttgaggaaattagtcaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8557771 |
gtagtatattttgttaactggatcacaaccctcttcaatagagagaagaacatactacaaaatcaaataaagcagtaagttttttaggaaattagtcaca |
8557672 |
T |
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| Q |
217 |
tgttctcaaccatacaaaagcaaggaaagaacagtacctttccgtcatcagtgacacttgctccaaacatatatttagggttgtgaggatctctccagca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8557671 |
tgttctcaaccatacaaaagcaaggaaagaacagtacctttccgtcatcagtgacacttgctccaaacatatatttagggttgtgaggatctctccagca |
8557572 |
T |
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| Q |
317 |
cagaatatcttgtgattgatccgtacccagaaaatgataatatagctcatgataaaggttagaat |
381 |
Q |
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| T |
8557571 |
cagaatatcttgtgattgatccgtacccagaaaatgataatatagctcatgataaaggttagaat |
8557507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 8553417 - 8553263
Alignment:
| Q |
25 |
gcatcaaaatcatcaataagctttacaaaagggaggaaggaatgtttattccgaaaaccttccagaccattaggaagttcggacaagtcaaagtagtata |
124 |
Q |
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| T |
8553417 |
gcatcaaagttatcaataagctcgacaaaaggaaggaaggcattttcattctgaaaaccttcgagaccattaggaagttcggacaagtcaaagtaataca |
8553318 |
T |
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| Q |
125 |
ttttgttaactggatcacaaccctcttcaatagagagaagaacatactgcaaaat |
179 |
Q |
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| T |
8553317 |
ttttgttaaccggatcacacccctcattaatagagagcagaacatactgcaaaat |
8553263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 8552659 - 8552515
Alignment:
| Q |
233 |
aaagcaaggaaagaacagtacctttccgtcatcagtgacacttgctccaaacatatatttagggttgtgaggatctctccagcacagaatatcttgtgat |
332 |
Q |
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| T |
8552659 |
aaagcacggaaaaaatggtacctttccatcaccagtgacacttgagtcaaacatatatttagagttcttaagatctctccaacacagaatatcttccgac |
8552560 |
T |
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| Q |
333 |
tgatccgtacccagaaaatgataatatagctcatgataaaggtta |
377 |
Q |
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| T |
8552559 |
tgatccgtacccagaaaatgatagtagagttcttgataaaggtta |
8552515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 379
Target Start/End: Complemental strand, 53737047 - 53736920
Alignment:
| Q |
252 |
acctttccgtcatcagtgacacttgctccaaacatatatttagggttgtgaggatctctccagcacagaatatcttgtgattgatccgtacccagaaaat |
351 |
Q |
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||||| || |||||||| ||| || |||||||| |||||||||||| | | ||||| ||||||||| ||||||| |||||||||||| |||| ||||| |
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| T |
53737047 |
accttcccatcatcagtaacaattcctccaaacgaatatttagggttttcatgatctttccagcacaaaatatctcctgattgatccgtgcccaaaaaat |
53736948 |
T |
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| Q |
352 |
gataatatagctcatgataaaggttaga |
379 |
Q |
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| T |
53736947 |
gataataaagcatatgataaaggttaga |
53736920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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