View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_11 (Length: 470)
Name: NF8939_low_11
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 29601183 - 29601639
Alignment:
| Q |
1 |
tatgccactatagccaattgtcattggcatttgagcttagtatttactcttggaacatacttatgtataattctggtgattttccatgtatgcttgtaat |
100 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29601183 |
tatgccactatatccaactgtcattggcatttgagcttagtatttactcttggaacatacttatgtataattctggtgattttccatgtatgcttgtaat |
29601282 |
T |
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| Q |
101 |
tctttaagtcacttcttcatgctttctataccctgcttttttattcttattttacaatactttctgatatataggttgagcaccctgtactaaatggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29601283 |
tctttaagtcacttcttcatgctttctataccctgcttttttattcttattttacaatactttctgatatataggttgagcatcctgtactaaatggatg |
29601382 |
T |
|
| Q |
201 |
gataagataaatatgtcagtaaaacaagttgcaattgggatgagtatcctatgaagcatggatacaaatactgatatcagacatgaacataaacacaaca |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
29601383 |
gataagataaatatgtcagtaaaacaaattgcaattgggatgagtatcctatgaagcatggatacaaatattgatatcagacataaacataaacacaaca |
29601482 |
T |
|
| Q |
301 |
tctataataatttgagaaaatcacataatttaattatgtgtcagtgtcatgttattgtccgacacatgtccaacaataggacactcttaatccaatgggt |
400 |
Q |
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| T |
29601483 |
tctataataatttgagaaaatcacataatttaattatgtgtcagtgtcatgttattgtccgacacatgtccaacaataggacactcttaatccaatggat |
29601582 |
T |
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| Q |
401 |
gtccgtgattcataatgggttaagttatgaatctatagtatagtgttattaatatat |
457 |
Q |
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| T |
29601583 |
atccgtgattcataatgggttaagttatgaatctatagtatagtgttattaatatat |
29601639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 9757184 - 9757012
Alignment:
| Q |
158 |
tactttctgatatataggttgagcaccctgtactaaatggatggataagataaatatgtcagtaaaacaagttgcaattgggatgagtatcctatgaagc |
257 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||| ||| | |||||| || || ||| |||||||||||| ||||||||||| |||||||| |
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| T |
9757184 |
tacttcctgatatataggttgagcatcctgtactaaatggatagatgaaataaatttgccattaacacaagttgcaatcaggatgagtatcttatgaagc |
9757085 |
T |
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| Q |
258 |
atggatacaaatactgatatcagacatgaacataaacacaacatctataataatttgagaaaatcacataatt |
330 |
Q |
| |
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| T |
9757084 |
atgaatacaaatacgaacattagacataaacacaagcaggataccaataataatttgagaaaatcacacaatt |
9757012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 2073938 - 2073980
Alignment:
| Q |
293 |
acacaacatctataataatttgagaaaatcacataatttaatt |
335 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||| |||| |
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| T |
2073938 |
acacaacatcgataataatttgagaaaataacataattcaatt |
2073980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 7214573 - 7214544
Alignment:
| Q |
305 |
taataatttgagaaaatcacataatttaat |
334 |
Q |
| |
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| T |
7214573 |
taataatttgagaaaatcacataatttaat |
7214544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 33950144 - 33950173
Alignment:
| Q |
305 |
taataatttgagaaaatcacataatttaat |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
33950144 |
taataatttgagaaaatcacataatttaat |
33950173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 5339116 - 5339145
Alignment:
| Q |
305 |
taataatttgagaaaatcacataatttaat |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5339116 |
taataatttgagaaaatcacataatttaat |
5339145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 33327813 - 33327728
Alignment:
| Q |
165 |
tgatatataggttgagcaccctg-tactaaatggatggataagataaatatgtcagtaaaacaagttgcaattgggatgagtatcc |
249 |
Q |
| |
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|||||||||||||||||| |||| |||| ||||||| | | |||||||| || ||| | |||||||||| |||||||| |||||| |
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| T |
33327813 |
tgatatataggttgagcatcctgttactgaatggatagctgagataaatctgccagcagcacaagttgcagttgggatgggtatcc |
33327728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 48202327 - 48202291
Alignment:
| Q |
298 |
acatctataataatttgagaaaatcacataatttaat |
334 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| |
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| T |
48202327 |
acatccataatagtttgagaaaatcacataatttaat |
48202291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 12985397 - 12985425
Alignment:
| Q |
302 |
ctataataatttgagaaaatcacataatt |
330 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12985397 |
ctataataatttgagaaaatcacataatt |
12985425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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