View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8939_low_12 (Length: 465)
Name: NF8939_low_12
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 12550644 - 12550203
Alignment:
| Q |
9 |
atacgtaccttctgcaaaggttctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgattatttgt |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12550644 |
atacgtaccttctgcaaaggatctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgatcatttgt |
12550545 |
T |
|
| Q |
109 |
taatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12550544 |
taatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaag |
12550445 |
T |
|
| Q |
209 |
aaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcggatacattgttattaccaaccaacctc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12550444 |
aaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcgaatacattgttattaccaaccaacctc |
12550345 |
T |
|
| Q |
309 |
tgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacaccttttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12550344 |
tgcatcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacaccttttt |
12550245 |
T |
|
| Q |
409 |
cattcagatttctcagacgccaacacagtgtttcctcctatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12550244 |
cattcagatttctcagacgccaacacagtgtttcctcctatg |
12550203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 9462357 - 9462194
Alignment:
| Q |
9 |
atacgtaccttctgcaaaggtt-ctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgattatttg |
107 |
Q |
| |
|
|||| ||||||||||| || || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
9462357 |
atacataccttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaacctgcaagcaacattaataattgttcaagttgattatttg |
9462258 |
T |
|
| Q |
108 |
ttaatcatctt------agacctcagaattagtcactctactttctggtatagatttttatggc |
165 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
9462257 |
ttaatcatcttagtttgagatctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University