View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8939_low_16 (Length: 395)
Name: NF8939_low_16
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 40261957 - 40262323
Alignment:
| Q |
18 |
accatagagttctcaatggtaagacattccagggctaggactggttctccactatcaggaaatattactctctcctgtattcaaaatcagtaaattttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40261957 |
accatagagttctcaatggtaagacattccagggctaggactggttctccactatcaggaaatattactctctcctgtattcaaaatcagtaaattttat |
40262056 |
T |
|
| Q |
118 |
atcaccgtgtttgttggttaatatagtgcacttatagatcatacttaatctaaaaaagtaaaatatttggctatgaagctcaaaagttttctcacgactc |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40262057 |
atcaccgtgtttgttgattaatatagtgcacttatagatcatacttaatctaaaa--gtaaaatatttggctatgaagctcaaaagttttctcacgactc |
40262154 |
T |
|
| Q |
218 |
aataatatcttaatatattattcataatgacttaatgactcaaaagttttcttatgtataactaaaaatattttaatccttacctctgtagccatgcgac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40262155 |
aataatatcttaatatattattcataatgacttaatgactcaaaagttttcttatgtataactaaaaatattttaatccttacctctgtagccatgcgac |
40262254 |
T |
|
| Q |
318 |
ctttctgatgatctgaaccgatcatagtcttgtacagtacattggttgaaaagcgaggacattctctgc |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40262255 |
ctttctgatgatctgaaccgatcatagtcttgtacagtacattggttgaaaagcgaggacattctctgc |
40262323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University