View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8939_low_23 (Length: 386)
Name: NF8939_low_23
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 2874790 - 2875011
Alignment:
| Q |
10 |
gtgttgcaatagaaacatgttgatttatgaacatgatatgaattagaattattagaataatttctaccgttagaattagttctaagattaaatcttctag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2874790 |
gtgttgcaatagaaacatgttgatttatgaacatgatatgaatta---------gaataatttctaccgttagaattagttctaagattaaatcttctag |
2874880 |
T |
|
| Q |
110 |
ggggatttacactatgcattttctttgtttctatgttgtcagaagttgtgcttgctttgacaaagattgttttatttgtgcttggtttgtttatataaat |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2874881 |
ggggatttacactgtgcattttctttgtttctatgttgtcagaagttgtgcttgctttgataaagattgttttatttgtgcttg----gtttatataaat |
2874976 |
T |
|
| Q |
210 |
tagaaaatccaagctcaattttgttattagaatat |
244 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |
|
|
| T |
2874977 |
tagaaaatccaaacccaattttgttattagaatat |
2875011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 2875409 - 2875482
Alignment:
| Q |
263 |
acttttctaaaatggccttcacctttggttgccgttctaattcctagaatttcacaacaatcatgtaactaata |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2875409 |
acttttctaaaatggccttcacctttggttgccgttctaattccaagaatttcacaacaatcatgtaactaata |
2875482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 26811585 - 26811639
Alignment:
| Q |
11 |
tgttgcaatagaaacatgttgatttatgaac---atgatatgaattagaattatt |
62 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
26811585 |
tgttgcaattgaaacatgttaatttatgaacgtgatgatatgaattagaactatt |
26811639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University