View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_24 (Length: 376)
Name: NF8939_low_24
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_24 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 74 - 361
Target Start/End: Complemental strand, 252070 - 251783
Alignment:
| Q |
74 |
tatgcatcaattgctctggatatttatttatatatcagtgctttttcttaaataacatgaaatgaattacataaataaagaatctaaattgtatctaatc |
173 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
252070 |
tatgcatcaattgcattgaatatttatttatatatcagtgctttttcttaaataacatgaaatgaattacataaataaagaatctaaattgtatctaatc |
251971 |
T |
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| Q |
174 |
aaaatctatgctttaatgtcagcagcataaatttacgccaagaaaaaggcaggaaatcttttaagagattgagatcacatgtccttcaaatttagtgttt |
273 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
251970 |
aaaatctacgctttaatgtcagcaacataaatttacgccaagaaaaaggcaggaaatcttttaagagatcgagatcacatgtccttcaaatttagtgttt |
251871 |
T |
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| Q |
274 |
gttgctcaaagtatgctcaagggcaatcattttagaagattgttgactaataacactgcttgtagaagggttttgagtcaatacaatt |
361 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
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| T |
251870 |
gttgctcaaagtatgttcaagggcaatcattttagaagattgttgactaataacactgctcgtagaaggattttgagtcaaaacaatt |
251783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 253337 - 253273
Alignment:
| Q |
6 |
cctcctaaacatacttacactcgagttgcattgaagttcattaaccacttgaggtcaatcactta |
70 |
Q |
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| T |
253337 |
cctccaaaacatacatacactccagttgcattgaagttcattaaccacttgtggtcaatcactta |
253273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 74 - 361
Target Start/End: Original strand, 14565305 - 14565592
Alignment:
| Q |
74 |
tatgcatcaattgctctggatatttatttatatatcagtgctttttcttaaataacatgaaatgaattacataaataaagaatctaaattgtatctaatc |
173 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14565305 |
tatgcatcaattgcattgaatatttatttatatatcagtgctttttcttaaataacatgaaatgaattacataaataaagaatctaaattgtatctaatc |
14565404 |
T |
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| Q |
174 |
aaaatctatgctttaatgtcagcagcataaatttacgccaagaaaaaggcaggaaatcttttaagagattgagatcacatgtccttcaaatttagtgttt |
273 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14565405 |
aaaatctacgctttaatgtcagcaacataaatttacgccaagaaaaaggcaggaaatcttttaagagatcgagatcacatgtccttcaaatttagtgttt |
14565504 |
T |
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| Q |
274 |
gttgctcaaagtatgctcaagggcaatcattttagaagattgttgactaataacactgcttgtagaagggttttgagtcaatacaatt |
361 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
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| T |
14565505 |
gttgctcaaagtatgttcaagggcaatcattttagaagattgttgactaataacactgctcgtagaaggattttgagtcaaaacaatt |
14565592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 14564038 - 14564102
Alignment:
| Q |
6 |
cctcctaaacatacttacactcgagttgcattgaagttcattaaccacttgaggtcaatcactta |
70 |
Q |
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| T |
14564038 |
cctccaaaacatacatacactccagttgcattgaagttcattaaccacttgtggtcaatcactta |
14564102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 44247136 - 44247104
Alignment:
| Q |
37 |
tgaagttcattaaccacttgaggtcaatcactt |
69 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
44247136 |
tgaaattcattaaccacttgaggtcaatcactt |
44247104 |
T |
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