View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_27 (Length: 363)
Name: NF8939_low_27
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 344
Target Start/End: Complemental strand, 39543407 - 39543065
Alignment:
| Q |
2 |
gacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagag |
101 |
Q |
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| T |
39543407 |
gacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaa |
39543308 |
T |
|
| Q |
102 |
ggaccaacatttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggg |
201 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543307 |
ggaccaacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggg |
39543208 |
T |
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| Q |
202 |
gaggtagtgctggctatgttatgccaatgccaagccctaaaaggaatggcgactggttgctatatatgcaccttcctaagggacacttgcacttcatgga |
301 |
Q |
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| T |
39543207 |
gaggtagtgctggctatgttatgccaatgccaagccctaaaaggaatggtgattggttgctctacatgcaccttcctaagggacacttgcacttcatgga |
39543108 |
T |
|
| Q |
302 |
agtccaagctcctcatttctttagaccagtctcttgggattac |
344 |
Q |
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| T |
39543107 |
ggtccaagcccctcatttctttagaccagtctcttgggattac |
39543065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 344
Target Start/End: Complemental strand, 39553426 - 39553084
Alignment:
| Q |
2 |
gacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagag |
101 |
Q |
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| T |
39553426 |
gacagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaa |
39553327 |
T |
|
| Q |
102 |
ggaccaacatttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggg |
201 |
Q |
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| T |
39553326 |
ggaccaacatttgttgtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggg |
39553227 |
T |
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| Q |
202 |
gaggtagtgctggctatgttatgccaatgccaagccctaaaaggaatggcgactggttgctatatatgcaccttcctaagggacacttgcacttcatgga |
301 |
Q |
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| T |
39553226 |
gaggtagtgctggctatgttatgccaatgccaagccctaaaaggaatggtgattggttgctctacatgcaccttcctaagggacacttgcacttcatgga |
39553127 |
T |
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| Q |
302 |
agtccaagctcctcatttctttagaccagtctcttgggattac |
344 |
Q |
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| T |
39553126 |
ggctcaagctccccatttctttagaccaatctcttgggattac |
39553084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 39586523 - 39586192
Alignment:
| Q |
12 |
catttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagagggaccaacat |
111 |
Q |
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| T |
39586523 |
catttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacat |
39586424 |
T |
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| Q |
112 |
ttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgc |
211 |
Q |
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| T |
39586423 |
ttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgc |
39586324 |
T |
|
| Q |
212 |
tggctatgttatgccaatgccaagccctaaaaggaatggcgactggttgctatatatgcaccttcctaagggacacttgcacttcatggaagtccaagct |
311 |
Q |
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||||| |||||||||||||| || |||||||||||||| || |||||||| || ||| | |||||||||| | ||||||| ||||||| | ||||| |
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| T |
39586323 |
gggctacgttatgccaatgcctagtcctaaaaggaatggtgattggttgctctacatgaatcttcctaaggaatacttgcatttcatggtggctgaagct |
39586224 |
T |
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| Q |
312 |
cctcatttctttagaccagtctcttgggatta |
343 |
Q |
| |
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|| ||||||||||||||| |||| |||||||| |
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| T |
39586223 |
ccccatttctttagaccaatctcatgggatta |
39586192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 17503135 - 17502996
Alignment:
| Q |
111 |
tttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
210 |
Q |
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| T |
17503135 |
tttgtggtatcttccgggcaaagatttccggaagacaaggtggattttggatggggaaaagttgtgtttgcatcctaccattttccttggggaggtgaag |
17503036 |
T |
|
| Q |
211 |
ctggctatgttatgccaatgccaagccctaaaaggaatgg |
250 |
Q |
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|||| ||||| |||||||||||||||||| ||||||||| |
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| T |
17503035 |
ctggttatgtgatgccaatgccaagccctctaaggaatgg |
17502996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 17475021 - 17474882
Alignment:
| Q |
111 |
tttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtg |
210 |
Q |
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|||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| || |||||||| ||| || |||||||| ||||| ||| |
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| T |
17475021 |
tttgtggtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtgtttgcatcctaccattttccatggggtggtgaaa |
17474922 |
T |
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| Q |
211 |
ctggctatgttatgccaatgccaagccctaaaaggaatgg |
250 |
Q |
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|||| ||||| |||||||||||||||||| ||||||||| |
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| T |
17474921 |
ctggttatgtgatgccaatgccaagccctttaaggaatgg |
17474882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 17503234 - 17503152
Alignment:
| Q |
6 |
gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcac |
88 |
Q |
| |
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||||| |||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| ||||| |||| |
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| T |
17503234 |
gaggaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcac |
17503152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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