View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8939_low_29 (Length: 350)

Name: NF8939_low_29
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8939_low_29
NF8939_low_29
[»] chr3 (16 HSPs)
chr3 (22-326)||(27771855-27772159)
chr3 (27-210)||(26146623-26146806)
chr3 (27-209)||(18082639-18082821)
chr3 (33-210)||(26118625-26118802)
chr3 (16-115)||(28077886-28077985)
chr3 (55-125)||(27465889-27465959)
chr3 (16-115)||(27908277-27908376)
chr3 (16-115)||(28176509-28176608)
chr3 (159-217)||(28078029-28078087)
chr3 (16-115)||(28514867-28514966)
chr3 (55-125)||(18724861-18724931)
chr3 (177-211)||(28176670-28176704)
chr3 (175-211)||(11407435-11407471)
chr3 (175-211)||(17750775-17750811)
chr3 (175-211)||(19052095-19052131)
chr3 (55-135)||(27368811-27368891)
[»] scaffold0067 (1 HSPs)
scaffold0067 (16-115)||(22447-22546)
[»] scaffold0043 (1 HSPs)
scaffold0043 (27-137)||(74658-74768)
[»] chr7 (1 HSPs)
chr7 (175-211)||(8696120-8696156)
[»] chr4 (2 HSPs)
chr4 (175-219)||(9331690-9331734)
chr4 (175-219)||(9385473-9385517)
[»] scaffold0912 (1 HSPs)
scaffold0912 (27-102)||(612-687)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 27771855 - 27772159
Alignment:
Q  22 ttctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27771855 ttctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacatagtgataatcacaaaggctgcagagttcttttaactacatg 27771954  T
Q  122 caatttgcgggtatgcgatattaatggttgtcgaagaacaattcaattggaaatcttatctgaagaagatgcatggatcatgttcaaaagatatgcttct 221  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27771955 caatttgcgggtatgcgatattaatgtttgtcgaagaacaattcaattggaaatcttatctgaagaagatgcatggatcatgttcaaaagatatgcttct 27772054  T
Q  222 ataagtgatgatatgtctagaagttttcttcataaggcacgtgctatttcaaatgaatgcaaaagattaccactagcaatatcagtgatcaccagcagtt 321  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  27772055 ataagtgatgatatgtctagaagttttcttcacaaggcacgtgctatttcaaatgaatgcaaaagattaccactagcaatatcagttatcgccagcagtt 27772154  T
Q  322 taagg 326  Q
    |||||    
T  27772155 taagg 27772159  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 26146806 - 26146623
Alignment:
Q  27 atattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatgcaatt 126  Q
    ||||| |||||||| ||||||||  |  ||||||||| ||||||||||||| ||| ||||||||||||||| |||| ||||||| |||| ||| |||||     
T  26146806 atattggatgatgtatgggaaaatctcaattttgatgacatagggattccaaatagtgataatcacaaaggatgcaaagttcttgtaaccacacgcaatc 26146707  T
Q  127 tgcgggtatgcgatattaatggttgtcgaagaacaattcaattggaaatcttatctgaagaagatgcatggatcatgttcaaaa 210  Q
    ||  ||||||| | |  |  || ||| |||  ||||||||| | ||  ||||| |||||||||| |||||||||||||||||||    
T  26146706 tggaggtatgcaacaaaatgggatgtggaaagacaattcaactagagctcttaactgaagaagacgcatggatcatgttcaaaa 26146623  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 18082821 - 18082639
Alignment:
Q  27 atattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatgcaatt 126  Q
    |||||||||||||||||||| ||  |||||||||||| ||||||||||||| ||| ||| ||||||||| | |||| ||||||| |||| ||| |||||     
T  18082821 atattagatgatgtgtgggataatcttgattttgatgtcatagggattccaaatagtgacaatcacaaacgatgcaaagttcttgtaaccacacgcaatc 18082722  T
Q  127 tgcgggtatgcgatattaatgg-ttgtcgaagaacaattcaattggaaatcttatctgaagaagatgcatggatcatgttcaaa 209  Q
    ||  ||||||| | |  ||||| ||||  ||  ||||||||| | || ||||||  ||||||||| ||||||||| ||||||||    
T  18082721 tggaggtatgc-aaaaaaatggcttgtaaaaagacaattcaacttgatatcttagatgaagaagaggcatggatcttgttcaaa 18082639  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 26118802 - 26118625
Alignment:
Q  33 gatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatgcaatttgcggg 132  Q
    |||||||||||||||||  |  ||||||||| ||||||| ||||| ||| ||||||||| ||||| |||| ||||||| |||| ||| || | ||| |||    
T  26118802 gatgatgtgtgggaaaatctcaattttgatgacatagggcttccaaatagtgataatcataaaggatgcaaagttcttgtaaccacacgcgaattgaggg 26118703  T
Q  133 tatgcgatattaat-ggttgtcgaagaacaattcaattggaaatcttatctgaagaagatgcatggatcatgttcaaaa 210  Q
    ||||||| |  ||| || ||| |||  ||||||||| ||||  ||||| |||||||||| |||| ||||||||||||||    
T  26118702 tatgcga-acaaatgggatgtggaaagacaattcaactggagctcttaactgaagaagaagcattgatcatgttcaaaa 26118625  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 28077886 - 28077985
Alignment:
Q  16 agattattctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaac 115  Q
    ||||| |||||||||||||||||||||||| | | ||  |||||||||  |||||||||||| ||| || |||||||| |||||| ||| ||||| ||||    
T  28077886 agattcttctaatattagatgatgtgtggggagatatcaattttgatgaaatagggattccagatagtggtaatcacagaggctgtagaattcttgtaac 28077985  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 27465959 - 27465889
Alignment:
Q  55 attttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatgcaat 125  Q
    |||||||||  |||||||||||||||| |||||||||||||||||| ||| ||||| |||| ||| |||||    
T  27465959 attttgatgaaatagggattccacatagtgataatcacaaaggctgtagaattcttataaccacacgcaat 27465889  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 27908277 - 27908376
Alignment:
Q  16 agattattctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaac 115  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||||| |||  || || |||||| | | ||| |||||||||||||| ||| ||||| ||||    
T  27908277 agattcttctaatattggatgatgtgtggggaaatattgattttaatgaaattggtattccatacagtgacaatcacaaaggctgtagaattcttataac 27908376  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 28176509 - 28176608
Alignment:
Q  16 agattattctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaac 115  Q
    ||||| |||||||||| ||||||||||||| | | || |||||| |||  |||||||||||| | | ||| |||||||||||||| ||| ||||| ||||    
T  28176509 agattcttctaatattggatgatgtgtggggagacatcgattttaatgaaatagggattccatacagtgacaatcacaaaggctgtagaattcttgtaac 28176608  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 28078029 - 28078087
Alignment:
Q  159 acaattcaattggaaatcttatctgaagaagatgcatggatcatgttcaaaagatatgc 217  Q
    ||||||||| ||||  |||||||||||||||| ||||||||||||||| ||||| ||||    
T  28078029 acaattcaactggatctcttatctgaagaagacgcatggatcatgttcgaaagacatgc 28078087  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 28514966 - 28514867
Alignment:
Q  16 agattattctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaac 115  Q
    ||||| |||||||||| ||||||||||||| | | ||||||||| |||  || || |||||| | | ||| |||||||||||||| | ||||||| ||||    
T  28514966 agattcttctaatattggatgatgtgtggggagatattgattttaatgaaattggtattccatacagtgacaatcacaaaggctgtatagttcttgtaac 28514867  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 18724931 - 18724861
Alignment:
Q  55 attttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatgcaat 125  Q
    ||||||||| ||||||||||||| | | ||||||||||||||| |||| ||| ||| |||| ||| |||||    
T  18724931 attttgatgacatagggattccaaagagtgataatcacaaaggatgcaaagtacttgtaaccacacgcaat 18724861  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 28176670 - 28176704
Alignment:
Q  177 ttatctgaagaagatgcatggatcatgttcaaaag 211  Q
    |||||||||||||| ||||||||||||||||||||    
T  28176670 ttatctgaagaagacgcatggatcatgttcaaaag 28176704  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 11407435 - 11407471
Alignment:
Q  175 tcttatctgaagaagatgcatggatcatgttcaaaag 211  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  11407435 tcttatctgaagaagatgcgtggatcatgttccaaag 11407471  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 17750811 - 17750775
Alignment:
Q  175 tcttatctgaagaagatgcatggatcatgttcaaaag 211  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  17750811 tcttatctgaagaagatgcgtggaccatgttcaaaag 17750775  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 19052131 - 19052095
Alignment:
Q  175 tcttatctgaagaagatgcatggatcatgttcaaaag 211  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  19052131 tcttatctgaagaagatgcgtggaccatgttcaaaag 19052095  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 27368811 - 27368891
Alignment:
Q  55 attttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatgcaatttgcgggtat 135  Q
    ||||||||| ||||||||||||| |||  |||||||||||||| |||| | | ||| |||| ||| ||||| || ||||||    
T  27368811 attttgatgacatagggattccaaatagagataatcacaaaggatgcaaattacttataaccacacgcaatctgagggtat 27368891  T

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Target: scaffold0067 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 22447 - 22546
Alignment:
Q  16 agattattctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaac 115  Q
    ||||| |||||||||| ||||||||||||||| | || ||||||||||  |||||||||||| ||| ||| || ||||||||||| ||| ||||| ||||    
T  22447 agattcttctaatattggatgatgtgtgggaagatatcgattttgatgaaatagggattccatatagtgacaaccacaaaggctgtagaattcttgtaac 22546  T

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Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 74768 - 74658
Alignment:
Q  27 atattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgcagagttcttttaactacatgcaatt 126  Q
    ||||| ||||||||||||| |||  |  ||||||||| ||||||||||||| | | ||||||||||||||| |||| ||| ||| |||| ||| |||||     
T  74768 atattggatgatgtgtggggaaatctcaattttgatgacatagggattccaaagagtgataatcacaaaggatgcaaagtacttgtaaccacacgcaatc 74669  T
Q  127 tgcgggtatgc 137  Q
    || ||||||||    
T  74668 tgagggtatgc 74658  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 8696156 - 8696120
Alignment:
Q  175 tcttatctgaagaagatgcatggatcatgttcaaaag 211  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8696156 tcttatctgaagaagacgcatggatcatgttcaaaag 8696120  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 9331734 - 9331690
Alignment:
Q  175 tcttatctgaagaagatgcatggatcatgttcaaaagatatgctt 219  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||    
T  9331734 tcttatctgaagaagatgcgtggaccatgttcaaaagttatgctt 9331690  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 9385517 - 9385473
Alignment:
Q  175 tcttatctgaagaagatgcatggatcatgttcaaaagatatgctt 219  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||    
T  9385517 tcttatctgaagaagatgcgtggaccatgttcaaaagttatgctt 9385473  T

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Target: scaffold0912 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 687 - 612
Alignment:
Q  27 atattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacataatgataatcacaaaggctgca 102  Q
    ||||| ||||||||||||| |||  |  ||||||||| ||||||||||||| | | ||||||||||||||| ||||    
T  687 atattggatgatgtgtggggaaatctcaattttgatgacatagggattccaaagagtgataatcacaaaggatgca 612  T

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