View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_33 (Length: 324)
Name: NF8939_low_33
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 1503440 - 1503159
Alignment:
| Q |
18 |
cttctatgcaaataactaactttgaccatatggtaagacacatttctcgttttttgttgttttgtatgaatcagcttagatgcatagggaaataataaaa |
117 |
Q |
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| T |
1503440 |
cttctatgcaaataactaactttgaccatatggtaagacacatttctcgttttttgttgttttgtatgaatcagcttagatgcatagggaaataataaaa |
1503341 |
T |
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| Q |
118 |
tcaaatttatgatggcttgcaaatttggtgaaggactaaaagctttcttaggaaaaggttnnnnnnnntgaaaaacaagtgagttaattaaaaaggnnnn |
217 |
Q |
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| T |
1503340 |
tcaaatttatgatggcttgcaaatttggtgaaggactaaaagctttcttaggaaaaggttaaaaaaaatgaaaaacaagtgagttaattgaaaagg-ttt |
1503242 |
T |
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| Q |
218 |
nnnnnnnnactgttcaaacaaaaacaagagaaagggtaaaaacaacttccttgtgatccactagaggaaataaagagccattt |
300 |
Q |
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| T |
1503241 |
ttttttttactgttcaaacaaaaacaagagaaagggtaaaaacaacttccttgtgatccactaggggaaataaagagccattt |
1503159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 1508623 - 1508547
Alignment:
| Q |
100 |
catagggaaataataaaatcaaatttatgatggcttgcaaatttggtgaaggactaaaagctttcttaggaaaaggtt |
177 |
Q |
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| T |
1508623 |
catagggaaataataaagttcaatttatgatagcttgtaaatttggtgaacaaat-aaagctttgttaggaaaaggtt |
1508547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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