View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_34 (Length: 283)
Name: NF8939_low_34
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 5701352 - 5701601
Alignment:
| Q |
16 |
aaacattaattaaatatatcttcataaaaagtaaagaatttattatctcactatattggtttctcgtccgctctacttaatttcggacattcaaaaacca |
115 |
Q |
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| T |
5701352 |
aaacattaattaaatatatcttcataaaaagaaaagaatttattatctcattatattggtttctcgtccgctctacttaattttggacattcaaaaacca |
5701451 |
T |
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| Q |
116 |
accctccattttcaaccacgcacagctctatcacatgttcgccatttccaaaagtgtgtgcattgctgattgaatttatccatatacatgcataaatttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5701452 |
accctccattttcaaccacgcacagctctatcacatgttcaccatttccaaaagtgtgtgcattgctgattgaatttatccatatacatgcataaattag |
5701551 |
T |
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| Q |
216 |
gtgggattatatgagactatgacaattgacaaccatgcatatcaaatact |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5701552 |
gtgggattatatgagactatgacaattgacaaccatgcatatcaaatact |
5701601 |
T |
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