View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_35 (Length: 279)
Name: NF8939_low_35
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 55522995 - 55522748
Alignment:
| Q |
19 |
agttcggttagtgagttaagagatatgcatgagttttacgcaggaggtttcgggttcgatcctgaaaactatcatgagtcatgaccacctatagttaaaa |
118 |
Q |
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| T |
55522995 |
agttcggttagtgagttaagagatatgcatgagttttacgcaggaggtttcgggtttgatcctgaaaactatcatgagtcatgaccacctatagttaaaa |
55522896 |
T |
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| Q |
119 |
acttactaattggtatgcatataatatatatgtggccaacttagcatcatagagtacatcaaagaaatctcataaaagaaaatgtacctcaaagaaaccc |
218 |
Q |
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| T |
55522895 |
acttactaattggtatgcatataatatatatgtggccaacttagcatcatagagtacatcaaagaaatctcataaaagaaaatgtacctcaaagaaaccc |
55522796 |
T |
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| Q |
219 |
caattttcacaagcatcttttatgatctccatggttgatgctttctct |
266 |
Q |
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| T |
55522795 |
caattttcacaagcatcttttatgatctccatggttgatgctttctct |
55522748 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 8926213 - 8926162
Alignment:
| Q |
202 |
gtacctcaaagaaaccccaattttcacaagcatcttttatgatctccatggt |
253 |
Q |
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| T |
8926213 |
gtacctcaaagaagccccagttctcacaagcatctttgatcatctccatggt |
8926162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 36872704 - 36872756
Alignment:
| Q |
201 |
tgtacctcaaagaaaccccaattttcacaagcatcttttatgatctccatggt |
253 |
Q |
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| T |
36872704 |
tgtacctcaaagaatccccaattctcacaagcatccttaattttctccatggt |
36872756 |
T |
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