View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_36 (Length: 278)
Name: NF8939_low_36
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 40010808 - 40010548
Alignment:
| Q |
1 |
ttttcaaagtatccaatccttctgatatgatatcaagcccttcatcctgcagaaacaaaacttggaatcattcatgaatgtagctagacccgccagtggc |
100 |
Q |
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| T |
40010808 |
ttttcaaagtatccaatccttctgatatgatatcaagcccttcatcctgcagaaacaaaacttggaatcattcatgaatgtagctagacccgccagtggc |
40010709 |
T |
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| Q |
101 |
aaataccataaaacaaaactcgggttctttctgctttagtatagacacaacaaagtgaagtaaagcagaaatctagctcacctgtttgatcttgcgcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
40010708 |
aaataccataaaacaaaactcgggttctttctgctttagtacagacacaccaaagtgaagtaaagccgaaatcttgctcacctgtttgatcttgcgcatt |
40010609 |
T |
|
| Q |
201 |
tcatattcatttcgaaactgattggattcttcactttgattgaaatagtcactgtcaagag |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40010608 |
tcatattcatttcgaaactgattggattcttcactttgattgaaatagtcactgtcaagag |
40010548 |
T |
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