View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8939_low_38 (Length: 263)
Name: NF8939_low_38
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_38 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 30809356 - 30809128
Alignment:
| Q |
14 |
attatacttaacaagtaatgaaaaaactctatcaattttgtcttcagaaacaaaaataagtaaattagttgtaaccttagcttaagtgatatctgaatca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30809356 |
attatacttaacaagtaatgaaaaaact--atcaattttgtcttcagaaataaaaataagtaaattagttgtaaccttagcttaagtgatatctgaatca |
30809259 |
T |
|
| Q |
114 |
ctatcagaaaatgaagaataatcagcaaacaccttattttttcgtccataacaagaccaccgccacgcgcgccgcagtgttcgatgacatagtatacaag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
30809258 |
ctatcagaaaatgaagaataatcagcaaacaccttattttttcgtccataacaagaccaccgccatgcgcgccgcagcgttcgatgacatagtatacaag |
30809159 |
T |
|
| Q |
214 |
atggtttgatgaaacaacatactggacaaca |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30809158 |
atggtttgatgaaacaacatactggacaaca |
30809128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University