View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_4 (Length: 733)
Name: NF8939_low_4
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_4 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 184 - 509
Target Start/End: Original strand, 9545604 - 9545930
Alignment:
| Q |
184 |
ctatgtaataaccattataacccaatttgctaagcaattcgcaaatctaaaattgttctgcnnnnnnnnnnnncagaaccaaaatttt-gtacctttgga |
282 |
Q |
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| T |
9545604 |
ctatgaaataaccattataacccaatttgctaagcaattcgcaaatctaaaattgttctgcaaaaaacaaaaacagaaccaaaatttttgtacctttgga |
9545703 |
T |
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| Q |
283 |
tccatcaaactaaataaaaaatgaattcatcattcacttaatgaggtttgacaaattcagcatcggaaacagcagaaccttcaacttgactaacatcgtc |
382 |
Q |
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| T |
9545704 |
tccatcaaactaaataaaaaatgaattcatcattctcttaatgaggtttgacaaattcagcatcggaaacagcagaaccttcaacttgactaacatcgtc |
9545803 |
T |
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| Q |
383 |
atcaccatcgtcttcatgttcatcttcatcttcatccatcggagcaggaaaatttagatctaacaaactatctccaacattcgcggaaactcgagcaacc |
482 |
Q |
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| T |
9545804 |
atcaccattgtcttcatgttcatcttcatcttcgtccatcggagcaggaaaatttagatctaacaaactatctccaacattcgcggaaactcgagcaacc |
9545903 |
T |
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| Q |
483 |
tcgacgttccttctaaccattgttgtt |
509 |
Q |
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| T |
9545904 |
ttgacgttccttctaaccattgttgtt |
9545930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 549 - 733
Target Start/End: Original strand, 9545964 - 9546148
Alignment:
| Q |
549 |
ccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacacattggacattcatgaattttcttttcagtaa |
648 |
Q |
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| T |
9545964 |
ccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagcaaattctctaaaacaaattggacattcatgaattttcttttcactaa |
9546063 |
T |
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| Q |
649 |
cattgatannnnnnncaatgttaattttttcatgttgttgtgaaattgaataatcaccaccactttctgcaacttgtttattttt |
733 |
Q |
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| T |
9546064 |
cattgatatttttttcaatgttaattttttcatgatgttgtgaaattgaataatcaccaccactttctgcaacttgtttattttt |
9546148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 9545437 - 9545544
Alignment:
| Q |
17 |
aatcagcatataaaattcaactcctccatggaactctaactttaatatcatacagaaacaaattaaacataacaataatccccaaaaaactgaattacag |
116 |
Q |
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| T |
9545437 |
aatcagcataaaaaattcaactcctccatggaactctaactctaatatcatacagaaacaaattaaacataacaataatccccaaaaaactgaattacag |
9545536 |
T |
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| Q |
117 |
ttagagtc |
124 |
Q |
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| T |
9545537 |
ttggagtc |
9545544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 644
Target Start/End: Original strand, 19594 - 19675
Alignment:
| Q |
563 |
atgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacacattggacattcatgaattttcttttca |
644 |
Q |
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| T |
19594 |
atgtgttcttttgtgtccaccaagtgcttgacccgaattaaatactcgaaaacataccggacattcatgaactttcttttca |
19675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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