View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8939_low_40 (Length: 261)
Name: NF8939_low_40
Description: NF8939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8939_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 33311324 - 33311550
Alignment:
| Q |
17 |
agattctttgctactctcttaaatctgtgttccctgtaaacatagcaccatattagtgaataatgatgtggcatttccttgaacatattagaaacttaag |
116 |
Q |
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| T |
33311324 |
agattctttgctactctcttaaatctgtgttccctgtaaacatagcaccatattagtgaataatgatgtggcatttccttgaacatattagaaacttaag |
33311423 |
T |
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| Q |
117 |
gacaagataagttgaaatgactcaatatttttgaaaggtggttttaatagaaaaatgtaaatggatttaactggtatgcaatatctgtagaaaataatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33311424 |
gacaagataagttgaaatgactcaatatttttgaaaggtggttttaatagaaaaatgtaaatggatttaactggtatgcaatatctgtagaaaataatat |
33311523 |
T |
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| Q |
217 |
tgcacaattagtcgactataatcggtg |
243 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
33311524 |
tgcacaattagtcgacaataatcggtg |
33311550 |
T |
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